Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +2

Query: 254 MNTSPRNTLSTTRRPISLTPVQDALLATSPSEIRASKPWRKWRCTCMTILAEGAPSI 424
           + T P   L      I+  P + A L    S+    + WR W+   +  + +  PS+
Sbjct: 824 ITTPPTPNLLRYFASIATNPKEQAQLNLLASDPAVYEDWRHWKFPNLVEVLDEFPSV 880


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 795 IKFNQDLIIEYVQNSILLSLP 733
           I F  D+I+  + NS+++ LP
Sbjct: 216 IVFGSDMIVRSIGNSLMVILP 236


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 152 KRDIVARPQEQIRSIFFFRCYKHKKLEACIMK 247
           KRD+    ++ +  + F   +  K  + CI+K
Sbjct: 11  KRDVFIEKEQMMNILMFLPSWDGKMPQPCILK 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,913
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)