Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09660.1 68418.m01117 malate dehydrogenase, glyoxysomal ident...    28   9.1  
At1g59850.1 68414.m06741 expressed protein                             28   9.1  

>At5g09660.1 68418.m01117 malate dehydrogenase, glyoxysomal
           identical to SP|Q9ZP05; identical to cDNA microbody
           NAD-dependent malate dehydrogenase GI:3929650
          Length = 354

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 56  RIGSLPVSDELKGDIQEGLQFCQK 127
           RIG     DEL G IQ+G++F +K
Sbjct: 331 RIGLEKAKDELAGSIQKGVEFIRK 354


>At1g59850.1 68414.m06741 expressed protein
          Length = 498

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -1

Query: 331 EQSVLNGSKRNRASRGRKRIPW-RSVHDVLHDARLQFLVLVASEEEN 194
           +++V++  KRNR++ G KR+ +   +H V  +   +  V+ +S+EE+
Sbjct: 359 QEAVVSKEKRNRSTLGAKRVLFPAKMHKVKENGSNKSQVVQSSDEES 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,887
Number of Sequences: 28952
Number of extensions: 297913
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)