Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40012
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    58   1e-09
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    44   3e-05
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    28   1.5  

>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +3

Query: 255 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEV-GRTGRVQVEDIIFLVRKDARKYAR 431
           Y FGDD NP  +S++ LE++V+++I E    A  + G   +V+V+D  F +R D +K  R
Sbjct: 27  YAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDDFKFALRDDPKKLGR 86

Query: 432 VKDLL 446
           V++LL
Sbjct: 87  VEELL 91


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
 Frame = +3

Query: 264 GDDQNPYTESVDFLEDLVIEFITETTHRAMEVG-RTGR--VQVEDIIFLVRKDARKYARV 434
           G+ Q+P  E+   +E+L+   + E   +A E+  R G   + VED+ FL+R D  K  R+
Sbjct: 22  GEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVEDLFFLIRHDRAKVNRL 81

Query: 435 KDLLTMNEELKKARK 479
           K  L+  E  KKA++
Sbjct: 82  KTYLSWKEVRKKAKE 96


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 440 VFNTCILSCIFTN*ENYVFYLDSSCSTNFHCPMCCFCYKFNN*VF*KINTFSIR 279
           VFN+ I  C   +  N++ YL++SC   +   + C   ++N+ +   +N   +R
Sbjct: 321 VFNS-ISGCDLYSLSNFLLYLENSCVITYDVSLDCSFNEYNDPLITYLNREDVR 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,856
Number of Sequences: 5004
Number of extensions: 42439
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)