Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40012
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0) 136 2e-32
SB_35231| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_22134| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_44090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_198| Best HMM Match : CKS (HMM E-Value=1.2) 29 3.7
SB_47154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_2470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15) 28 6.4
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_10254| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0)
Length = 160
Score = 136 bits (329), Expect = 2e-32
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +3
Query: 255 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVGRTGRVQVEDIIFLVRKDARKYARV 434
YGFGDDQ PYTESVD LEDLV+E+ITE T +AM+VG+ G+V EDI+FL+RKD +KYARV
Sbjct: 39 YGFGDDQCPYTESVDLLEDLVVEYITEMTLKAMDVGKKGKVHCEDIVFLIRKDPKKYARV 98
Query: 435 KDLLTMNEELKKARKAFDEVKYVE 506
KDLLTMNEELKKARKAFD Y E
Sbjct: 99 KDLLTMNEELKKARKAFDAESYGE 122
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 211 SGRKRLFSKELRCMI 255
S RKRLF KELRCM+
Sbjct: 24 SKRKRLFHKELRCMM 38
>SB_35231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 459 ELKKARKAFDEVKYVEDNSNHTVAI 533
ELKK+ A+D +Y E N NHT +
Sbjct: 5 ELKKSPLAWDRTRYEEQNGNHTYGL 29
>SB_22134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 459 ELKKARKAFDEVKYVEDNSNHTVAI 533
ELKK+ A+D +Y E N NHT +
Sbjct: 5 ELKKSPLAWDRTRYEEQNGNHTYGL 29
>SB_44090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 453 NEELKKARKAFDEVKYVEDNSNHTVAI 533
N ELKK+ A+D + E N NHT +
Sbjct: 8 NNELKKSPLAWDRTRSEEQNGNHTYGL 34
>SB_198| Best HMM Match : CKS (HMM E-Value=1.2)
Length = 862
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 333 ETTHRAMEVG---RTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELKKARKAFDEVKYV 503
E TH +E R+ +V+ ED + + R++ R R +++ +EEL A +K+V
Sbjct: 573 EWTHSKVEEKVDIRSYQVRTEDGL-VFRRNKRHLRRTPEVMVPHEELVMPPSAPVTIKHV 631
Query: 504 EDNSNHTVAIQPTP 545
+ N T P P
Sbjct: 632 PEKENKTAQEPPPP 645
>SB_47154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 453 NEELKKARKAFDEVKYVEDNSNHTVAI 533
NE KK+ A+D +Y E N NHT +
Sbjct: 11 NELKKKSPLAWDRTRYEEQNGNHTYGL 37
>SB_2470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 453 NEELKKARKAFDEVKYVEDNSNHTVAI 533
N ELKK+ A+D + E N NHT +
Sbjct: 8 NNELKKSPLAWDRTRSEEQNGNHTYGL 34
>SB_11086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 459 ELKKARKAFDEVKYVEDNSNHTVAI 533
ELKK+ AFD + E N NHT +
Sbjct: 13 ELKKSPLAFDRTRSEEQNGNHTYGL 37
>SB_13140| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-15)
Length = 987
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 329 NRNNT*GNGSW*NRKSPSRRHNFLSS*RCTKVCTC 433
N++ NG N S R+ ++ S RC K C+C
Sbjct: 836 NKSRRYSNGKIRNNNSNRGRNRYIDSKRCRKSCSC 870
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 339 THRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDL-LTMNEELKKARKAFDEVK 497
THRA++ GRT + Q + + R+ + + L + E+ KK R+ ++++
Sbjct: 723 THRALKTGRTNKAQYSEATNIYREPYLIQEKTQRLKYAIEEKAKKERERMEQLE 776
>SB_10254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 459 ELKKARKAFDEVKYVEDNSNHTVAI 533
ELKK+ A+D ++ E N NHT +
Sbjct: 13 ELKKSPLAWDRIRSEEQNGNHTYGL 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,398
Number of Sequences: 59808
Number of extensions: 302927
Number of successful extensions: 1372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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