Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40011
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 60 5e-10
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 58 2e-09
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 1.9
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 2.5
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273... 27 3.4
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273... 27 3.4
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 27 4.4
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 27 5.9
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 27 5.9
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 26 7.7
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 60.1 bits (139), Expect = 5e-10
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +3
Query: 9 LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 158
L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D YF
Sbjct: 99 LKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF 147
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 257 KTDQKTVDEAVIKAIGARPDKKVLRG 334
K DQK VD +IKAI PD K G
Sbjct: 178 KDDQKAVDAELIKAIEVVPDLKSYLG 203
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3
Query: 9 LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 158
L SGLLLVTGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 122 LKSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 170
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/34 (55%), Positives = 21/34 (61%)
Frame = +2
Query: 257 KTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
K DQK VD +IKAI A PD L+ YL A F L
Sbjct: 201 KEDQKVVDAELIKAIEAVPD---LKTYLGARFSL 231
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 295 SHRSPTRQEGAPRIPQSGLR 354
SHR P QEGAP P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 73 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 195
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>11_04_0195 -
14725553-14725571,14725988-14726079,14727214-14727335,
14727588-14727597,14727798-14727896,14728046-14728612
Length = 302
Score = 27.5 bits (58), Expect = 3.4
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +1
Query: 115 SATSNCQNTSMMITSRRIRSA-SNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCD 291
SA S I++RRI S N S + P R+T S G D
Sbjct: 138 SARPTASPISSSISARRIPSLLCNHDSGLASSVYHAPPPPRSTPMDLLSVMQSQSMEGTD 197
Query: 292 QS-HRSPTRQEGAPRIPQSGLRT 357
S H SPT G + QSG +T
Sbjct: 198 ASCHHSPTTAAGEALVQQSGGQT 220
>09_05_0005 +
20026190-20026343,20026483-20026682,20026918-20027309,
20027646-20027778,20027858-20027942,20028216-20028235
Length = 327
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 160 RRIRSASNVQSNAKRVMTSLPQKKRN-TFHLSRQNRSEDSRRGCDQSH 300
RRI + N +++ +S+P ++RN + SR R+ D G SH
Sbjct: 153 RRIETTENEANDSMCGSSSMPHRRRNSSVGSSRMTRNLDPGAGSSSSH 200
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.1 bits (57), Expect = 4.4
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 91 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQ--SNAKRVMTS-LPQKKRNTFHLSRQN 261
S P SATS +++ TSR S+SNV S A + +S +P R++ S
Sbjct: 204 SRPGASTISATSRSNASTISATSRPGSSSSNVPGISRATSLSSSTVPSMSRSSSRSSTPT 263
Query: 262 RSEDSRRGCDQSHRSPT 312
R R RSP+
Sbjct: 264 RQPAMRSSAPAVGRSPS 280
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 55 RARYAVFLSA---M*SAPPPEFHSATSNCQNTSMMITSRR 165
R+RY +FLS + S PPE S NTS++ +RR
Sbjct: 455 RSRYKLFLSCSLILTSVIPPELPMELSIAVNTSLIALARR 494
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 219 ATKKEKYVPSEQAKPIRRQSTRL*SKPSEPDP 314
A K+ P+ A+P +RQ+ + KP+ P P
Sbjct: 85 ANKQNAVAPAAVARPAQRQARKAPVKPAPPPP 116
>02_05_0030 + 25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 360 RSPKAALRYPRSTFLSGRAPMALIT 286
RSP A LR+PR F +G A+++
Sbjct: 1011 RSPFAGLRHPRGVFWNGSLVWAMLS 1035
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,251
Number of Sequences: 37544
Number of extensions: 192188
Number of successful extensions: 577
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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