Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40011
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 62 8e-11
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 62 8e-11
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 62 8e-11
At3g10440.1 68416.m01252 hypothetical protein 28 1.6
At2g14010.1 68415.m01557 hypothetical protein and genefinder 27 3.8
At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)... 27 5.0
At1g06660.1 68414.m00706 expressed protein 27 5.0
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 26 6.6
At3g26260.1 68416.m03276 Ulp1 protease family protein contains P... 26 6.6
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera... 26 6.6
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera... 26 6.6
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera... 26 6.6
At2g37100.1 68415.m04552 protamine P1 family protein contains Pf... 26 6.6
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family... 26 6.6
At1g21475.1 68414.m02687 hypothetical protein 26 6.6
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 62.5 bits (145), Expect = 8e-11
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = +3
Query: 9 LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 158
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
Score = 33.9 bits (74), Expect = 0.033
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 224 KKREIRSI*AGKTD-QKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
+K E + I GK D QK VD A+IKAI A P+ L+ YL A F L
Sbjct: 180 EKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSL 222
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 62.5 bits (145), Expect = 8e-11
Identities = 30/50 (60%), Positives = 35/50 (70%)
Frame = +3
Query: 9 LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 158
L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
Score = 33.5 bits (73), Expect = 0.043
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +2
Query: 224 KKREIRSI*AGKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
+K+EI + K DQK VD A+IKAI A P+ L+ YL A F L
Sbjct: 183 EKKEIPQV--KKDDQKAVDAALIKAIEAVPE---LKTYLGARFSL 222
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 62.5 bits (145), Expect = 8e-11
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 LPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXX 188
L SGLLLVTGPF N PLRR+ Q YVIGTST+I + K F+D YF
Sbjct: 113 LSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKK 168
Query: 189 XXXXEGDDIFATKKE-KYVPSEQ 254
EG+ A K+E K +P E+
Sbjct: 169 KKKTEGEFFEAEKEEKKEIPQEK 191
Score = 34.3 bits (75), Expect = 0.025
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 257 KTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 358
K DQKTVD A+IK+I A P+ KV YL A F L
Sbjct: 192 KEDQKTVDAALIKSIEAVPELKV---YLGARFSL 222
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 249 EQAKPIRRQSTRL*SKPSEPDPTRRCSADTSKR 347
E P+RR+S RL S+ EP + S +T+KR
Sbjct: 307 ESRFPLRRRSARLKSQEPEPSESFHDSIETTKR 339
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 307 GSDGFDHSLVDCLLIGFACSDGTYFSFFV 221
G GFDH L++C GF + YF F V
Sbjct: 731 GMYGFDHDLLECTHSGF---ERVYFPFLV 756
>At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)
identical to heat shock protein 70 [Arabidopsis
thaliana] GI:6746590
Length = 682
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 355 SEGRFEVSAEHLLVGSGSDGFDHSLVDCLLIGFACSDG 242
S G FEV A + G + FD++L+D L+ F ++G
Sbjct: 261 SNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEG 298
>At1g06660.1 68414.m00706 expressed protein
Length = 481
Score = 26.6 bits (56), Expect = 5.0
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +1
Query: 115 SATSNCQNTSMMITSR---RIRSASN----VQSNAKRVMTSLPQKKRNTFHLSRQNRSED 273
S TS +S +I R RI SAS+ V+S + L + R TF + N+S
Sbjct: 166 SFTSEQTASSCVIDVRDNARISSASSDGTEVESVGTAIKGELDRTARPTFTAGK-NKSVR 224
Query: 274 SRRGCDQSHRSPTRQEGAPRIPQSG 348
DQS+ S + + G+ R P+ G
Sbjct: 225 FECDLDQSNSSNSSENGSSRKPEMG 249
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 243 PSEQAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSD 356
PS + P + +T P P P S D S PSD
Sbjct: 279 PSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQSAAPSD 316
>At3g26260.1 68416.m03276 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 989
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 307 GSDGFDHSLVDCLLIGFACSDGTYFSFFV 221
G GFDH L++C GF YF F V
Sbjct: 845 GMYGFDHDLLECTPSGFG---RVYFPFLV 870
>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 462
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 29 SYWTFCFQFVPA-TPYSSALCDRHLHQN 109
S+ + F +PA TPYSS+ RH H++
Sbjct: 60 SFPSITFHHLPAVTPYSSSSTSRHHHES 87
>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 446
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 29 SYWTFCFQFVPA-TPYSSALCDRHLHQN 109
S+ + F +PA TPYSS+ RH H++
Sbjct: 60 SFPSITFHHLPAVTPYSSSSTSRHHHES 87
>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 29 SYWTFCFQFVPA-TPYSSALCDRHLHQN 109
S+ + F +PA TPYSS+ RH H++
Sbjct: 60 SFPSITFHHLPAVTPYSSSSTSRHHHES 87
>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam
PF00260: Protamine P1
Length = 297
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 216 FATKKEKYVPSEQAKPIRRQSTRL*SKPSEPDPTRR 323
F+ K EK S +++PI +ST +P EP+ TR+
Sbjct: 133 FSKKSEKRSSSSRSEPIFGRST---VEPEEPEETRK 165
>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
protein
Length = 523
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/84 (22%), Positives = 33/84 (39%)
Frame = +1
Query: 91 SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSE 270
S PPPE ++ + S K ++ S P ++ + + R
Sbjct: 186 SPPPPESKPGQADPPDNIFNALGNEFSHPSGA-GRGKPLVESAPIRQEDNRQIRRPPPPP 244
Query: 271 DSRRGCDQSHRSPTRQEGAPRIPQ 342
+R Q R+PT ++G P+ PQ
Sbjct: 245 QQQRVQPQQKRAPTVKDGTPK-PQ 267
>At1g21475.1 68414.m02687 hypothetical protein
Length = 181
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 136 NTSMMITSRR--IRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGC 288
++S TSRR I +A N +SNA + + L + F + D RGC
Sbjct: 2 SSSSSQTSRRPYISAALNSRSNAAKTLNELIKIHGLEFAFKKDGVKRDMERGC 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,962,678
Number of Sequences: 28952
Number of extensions: 146835
Number of successful extensions: 495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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