Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40010
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   148   5e-37
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   148   7e-37
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    34   0.014
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.53 
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    28   0.93 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.8  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   4.9  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.9  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  148 bits (359), Expect = 5e-37
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
           R+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+V
Sbjct: 82  RLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIV 141

Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
           N+PSF+VRLD+ KHIDF+L SP+GG
Sbjct: 142 NVPSFVVRLDAQKHIDFALSSPYGG 166



 Score =  126 bits (305), Expect = 2e-30
 Identities = 59/79 (74%), Positives = 67/79 (84%)
 Frame = +1

Query: 25  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 204
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 205 KDPKRLFEGNALLRRLVVL 261
           KDPKRLFEGNA++RRLV L
Sbjct: 65  KDPKRLFEGNAIIRRLVRL 83



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +2

Query: 509 GRPGRVKRKNLRKGQGGG 562
           GRPGR KRK LR  Q GG
Sbjct: 167 GRPGRCKRKRLRSQQEGG 184


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  148 bits (358), Expect = 7e-37
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
           R+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+V
Sbjct: 82  RLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIV 141

Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
           N+PSF+VRLD+ KHIDF+L SP+GG
Sbjct: 142 NVPSFVVRLDTQKHIDFALSSPYGG 166



 Score =  126 bits (305), Expect = 2e-30
 Identities = 59/79 (74%), Positives = 67/79 (84%)
 Frame = +1

Query: 25  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 204
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 205 KDPKRLFEGNALLRRLVVL 261
           KDPKRLFEGNA++RRLV L
Sbjct: 65  KDPKRLFEGNAIIRRLVRL 83



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 509 GRPGRVKRKNLRKGQGG 559
           GRPGR KRK LR  +GG
Sbjct: 167 GRPGRCKRKRLRSQEGG 183


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 258 IGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 437
           +G+L  K    D      +     RRL   + K  +++ +  A  LI Q H+RV   V+ 
Sbjct: 85  MGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVIT 144

Query: 438 IPSFIV 455
            P+++V
Sbjct: 145 DPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +2

Query: 311  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 442
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 213 QEIVRR*CPSTSSGRIGVLDEKQMKLDYVLGLKIEDFLERR 335
           +E +R    S  S  +G++ EK M+LD V G K+E  ++RR
Sbjct: 86  KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 282 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 413
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 553 LSLAEVLPLDTS-RTTPPNGDFREKSMCLP 467
           LS+AE+LP D S R +  +  F E S C P
Sbjct: 661 LSIAEILPADESLRYSSSSVPFYESSTCAP 690


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 520 SRTTPPNGDFREKSMCLPESRRTINDGMFT 431
           S TT  N   R+K   L E  R + DG FT
Sbjct: 116 SSTTLENDQLRQKVRQLEEELRILKDGSFT 145


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 306 DQAHNRVSSVFHPVLQYDQTT*KGITFE 223
           DQA N  S V H +  +DQTT  G+ +E
Sbjct: 75  DQAINSTSRVCHELRNWDQTT-GGLAYE 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,071
Number of Sequences: 5004
Number of extensions: 51170
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)