Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40010
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 134 5e-32
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 134 5e-32
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 134 5e-32
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 81 9e-16
07_03_1357 - 25982861-25983068,25983354-25983361 52 5e-07
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.31
03_06_0069 - 31449319-31450368 31 0.72
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 2.9
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 2.9
12_01_0466 + 3649500-3649635,3649925-3650520 29 3.8
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.8
03_04_0242 - 19238016-19238679,19239487-19239929 29 3.8
12_01_0843 + 7891622-7892524 28 5.1
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 5.1
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 8.9
02_05_1008 - 33461225-33462334 27 8.9
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 27 8.9
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 134 bits (324), Expect = 5e-32
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 84 RYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIV 143
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
NIPSF+VR++S KHIDFSL SPFGG
Sbjct: 144 NIPSFMVRVESEKHIDFSLTSPFGG 168
Score = 112 bits (269), Expect = 2e-25
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 213
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 214 KRLFEGNALLRRL 252
+R+FEG ALLRR+
Sbjct: 70 RRIFEGEALLRRM 82
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 509 GRPGRVKRKNLRKGQGGG 562
G PGRVKRKN +K GGG
Sbjct: 169 GPPGRVKRKNQKKASGGG 186
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 134 bits (324), Expect = 5e-32
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 107 RYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIV 166
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
NIPSF+VR++S KHIDFSL SPFGG
Sbjct: 167 NIPSFMVRVESEKHIDFSLTSPFGG 191
Score = 111 bits (266), Expect = 6e-25
Identities = 49/71 (69%), Positives = 61/71 (85%)
Frame = +1
Query: 40 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 219
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 220 LFEGNALLRRL 252
+FEG ALLRR+
Sbjct: 95 IFEGEALLRRM 105
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 509 GRPGRVKRKNLRKGQGGG 562
G PGRVKRKN +K GGG
Sbjct: 192 GPPGRVKRKNQKKASGGG 209
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 134 bits (324), Expect = 5e-32
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 300 RYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIV 359
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
NIPSF+VR++S KHIDFSL SPFGG
Sbjct: 360 NIPSFMVRVESEKHIDFSLTSPFGG 384
Score = 112 bits (269), Expect = 2e-25
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 213
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 214 KRLFEGNALLRRL 252
+R+FEG ALLRR+
Sbjct: 286 RRIFEGEALLRRM 298
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 509 GRPGRVKRKNLRKGQGGG 562
G PGRVKRKN +K GGG
Sbjct: 385 GPPGRVKRKNQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 80.6 bits (190), Expect = 9e-16
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 213
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 214 KRLFEGNALLRRL 252
+R+FEG ALLR +
Sbjct: 59 RRIFEGEALLRHM 71
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 413
R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +3
Query: 414 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 509
RV +Q+VNIPSFIVRL+S KHI FSL SP GG
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGG 34
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYG 117
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 330 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>03_06_0069 - 31449319-31450368
Length = 349
Score = 31.1 bits (67), Expect = 0.72
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 384 HDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYDQTT 244
HD +S G L P+SA +P + SDQ H VS+ P YD T
Sbjct: 237 HDVLSSLG-LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYDVAT 282
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 329 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 457
A+S G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 512 RPGRVKRKNLRKGQGGGAPMMK 577
RPG RKN +GQGGG + K
Sbjct: 1372 RPGEWNRKNNNRGQGGGREVWK 1393
>12_01_0466 + 3649500-3649635,3649925-3650520
Length = 243
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 589 INLPLHHWRSATLSLAEVLPLDTSRTTPPNGDFREKSMCLPESRRTINDGM 437
+ L LH W ++ D SRT N E+S+ ES R+ N G+
Sbjct: 193 LGLQLHLWAEPKREAKQIEAADCSRTKSENEGKNERSVQKQESIRSKNKGV 243
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 312 IEDFLERRLQTQVFKAGLAKSIHHAR 389
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 372 SIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF---GGVVLDVSRG 533
S+ + ++ +++R + + ++ +D+GK F L+ PF GV +DV G
Sbjct: 192 SVRYPAGIVEDVPVKIRDFFILVDFVVLDMDTGKETPFILRRPFLSTAGVNIDVGTG 248
>12_01_0843 + 7891622-7892524
Length = 300
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 562 SATLSLAEVLPLDTSRTTPP 503
SA L L V PLDT+ TTPP
Sbjct: 120 SAMLPLLPVRPLDTTTTTPP 139
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 88 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 210
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 67 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 201
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +3
Query: 273 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 452
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 453 VRLDSGKHI 479
+ +DSG+ +
Sbjct: 217 L-IDSGRRV 224
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 130 REVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVVLEY 267
+ V ++Y +IR A EL DPK + + +L+ L EY
Sbjct: 593 KSVQAIRYQTPQIRSALLELEKASTDDPKAVSDAQSLVTALENFEY 638
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,543,794
Number of Sequences: 37544
Number of extensions: 379714
Number of successful extensions: 1020
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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