Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40010
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   7e-39
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   6.9  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   6.9  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 27   9.1  
SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)              27   9.1  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  157 bits (381), Expect = 7e-39
 Identities = 73/85 (85%), Positives = 80/85 (94%)
 Frame = +3

Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
           RIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+V
Sbjct: 80  RIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLV 139

Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
           N+PSF+VRLDS KHIDFSL SP+GG
Sbjct: 140 NVPSFVVRLDSQKHIDFSLNSPYGG 164



 Score =  141 bits (342), Expect = 4e-34
 Identities = 68/75 (90%), Positives = 71/75 (94%)
 Frame = +1

Query: 31  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 210
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 211 PKRLFEGNALLRRLV 255
           P+RLFEGNALLRRLV
Sbjct: 65  PRRLFEGNALLRRLV 79



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +2

Query: 509 GRPGRVKRKNLRKGQGG 559
           GRPGRVKRKN++KGQGG
Sbjct: 165 GRPGRVKRKNMKKGQGG 181


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 58  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 216
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 321 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
           F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+F+V
Sbjct: 105 FCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPAFLV 149


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 438 CSQLACGHEYAFAGSKFWHDGWTSP 364
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 73  KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 216
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 135  FTLVAETVLSDDLQLLVKACLFKRTTRCHVRL 40
            FT++++  ++D ++ L+ ACL    T   +RL
Sbjct: 1620 FTVISDKTVADTIEALIGACLMSSGTNAALRL 1651


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 440 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 312
           D+  + A   MP P   +G+ D + Q +FE +++  T   VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423


>SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)
          Length = 542

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 260 WSTG*KTDETRLCAWSED*GLLGASSADAGVQSWP 364
           WS G KT+ET +  W       G  +A+  +  WP
Sbjct: 298 WSNGFKTEETAITTWPN-----GFKTAETTITRWP 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,716
Number of Sequences: 59808
Number of extensions: 417847
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)