Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40010
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 141 4e-34
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 138 2e-33
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 32 0.26
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 31 0.80
At4g32190.1 68417.m04581 centromeric protein-related low similar... 29 2.4
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.2
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.2
At1g43730.1 68414.m05028 hypothetical protein 28 4.2
At5g41310.1 68418.m05020 kinesin motor protein-related 27 7.4
At5g28615.1 68418.m03493 hypothetical protein 27 7.4
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P... 27 9.8
At1g60720.1 68414.m06835 hypothetical protein 27 9.8
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 141 bits (341), Expect = 4e-34
Identities = 66/85 (77%), Positives = 76/85 (89%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+V
Sbjct: 84 RYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLV 143
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
NIPSF+VRLDS KHIDF+L SPFGG
Sbjct: 144 NIPSFMVRLDSQKHIDFALTSPFGG 168
Score = 119 bits (286), Expect = 2e-27
Identities = 51/73 (69%), Positives = 65/73 (89%)
Frame = +1
Query: 34 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 213
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 214 KRLFEGNALLRRL 252
+R+FEG ALLRR+
Sbjct: 70 RRIFEGEALLRRM 82
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Frame = +2
Query: 509 GRPGRVKRKN----LRKGQGGG 562
GRPGRVKR+N +K GGG
Sbjct: 169 GRPGRVKRRNEKSASKKASGGG 190
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 138 bits (335), Expect = 2e-33
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +3
Query: 255 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 434
R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+V
Sbjct: 84 RYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLV 143
Query: 435 NIPSFIVRLDSGKHIDFSLKSPFGG 509
NIPSF+VR++S KH+DFSL SPFGG
Sbjct: 144 NIPSFMVRVESQKHVDFSLTSPFGG 168
Score = 122 bits (294), Expect = 2e-28
Identities = 56/82 (68%), Positives = 69/82 (84%)
Frame = +1
Query: 7 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 186
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 187 LLTLEEKDPKRLFEGNALLRRL 252
LLTL+EK+P+R+FEG ALLRR+
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRM 82
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 509 GRPGRVKRKNLRKG 550
GRPGRVKR+N R G
Sbjct: 169 GRPGRVKRRNERAG 182
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 306 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 455
L + F RRL T + A+ A I Q H+RV + + P+F+V
Sbjct: 99 LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 518 QDDPTERRFQREVNVLARVQAHN 450
Q E RF REVN+++RVQ HN
Sbjct: 55 QQSSLESRFVREVNMMSRVQHHN 77
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 109 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVVLEYWMK 276
+YG+ NKR V + +T +R E+L ++ + E N ++ RL E +K
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRLEAKEQELK 654
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 40 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 156
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 278 TDETRLCAWSED*GLLGASSADAGVQSW 361
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 396 SKFWHDGWTSPGQL 355
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 340 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 447
RRR S A S + F G F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 396 SKFWHDGWTSPGQL 355
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; low similarity to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; identical to cDNA hypothetical protein,
partial (1189 bp) GI:2326349
Length = 489
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 25 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 138
P K PR PF D+E ++ + RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 390 FWHDGWTSPGQL 355
FWHD WTS G L
Sbjct: 25 FWHDSWTSLGPL 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,874
Number of Sequences: 28952
Number of extensions: 286031
Number of successful extensions: 805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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