Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40009
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1370 + 29645598-29646288,29646364-29646752                       33   0.40 
02_01_0411 - 2998806-3000938                                           31   0.92 
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    29   6.5  
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    29   6.5  

>06_03_1370 + 29645598-29646288,29646364-29646752
          Length = 359

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 170 TFKGLSKKHFIT*WPPRWILSTSSPSSSNYHQVTGYAHTESNPNPGTSQ 316
           TFKG+ + H     P         PSS+ YHQ+TG    ES+P  G+S+
Sbjct: 274 TFKGILRDH----GPADEAAGQLPPSSAEYHQLTGQGREESSP-AGSSE 317


>02_01_0411 - 2998806-3000938
          Length = 710

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
 Frame = +3

Query: 30  MSSNNLDGNQQQLNAQVNN-PSQNVEIK-----GCFPSST 131
           +S N+L+GN Q+LN+ V+N P Q + I      G FPSST
Sbjct: 125 VSFNHLNGNLQELNSSVSNQPLQVLNISSNQFTGAFPSST 164


>07_03_0965 -
           22996575-22999112,22999202-22999636,22999717-22999801,
           22999888-22999957,23000050-23000293,23000396-23000482,
           23000655-23000706,23000830-23001226,23001324-23001648,
           23001748-23001914,23002007-23002547
          Length = 1646

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 463 FKSTTKFRCYSKD*ECNTSRMSCDADNETVAGNTSPQPSTS 585
           F  T +F C SK  E N      DA  E  +GN+SP PS+S
Sbjct: 292 FGLTRQFPCPSKPVESNHKLEVRDAP-EAKSGNSSPAPSSS 331


>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 12  RNGNTGMSSNNLDGNQQQLNAQVNNPSQNVEIKGCFPSSTETSRLNH 152
           RN +     N+LDG++    A+ N PS+N   + C+P+  +    +H
Sbjct: 370 RNSDRKWHGNHLDGHR----AKRNMPSENQSKESCYPNMKDWQSYSH 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,982,679
Number of Sequences: 37544
Number of extensions: 515175
Number of successful extensions: 1204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)