Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40009
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 530 VMLTMKQ*LGIHLHSPALVQNLFKQ-----YKLSWDPMQ 631
           + L + Q + ++L +  +  NL+ +     YKL WDP +
Sbjct: 54  IKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWDPKE 92


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 212 PPRWILSTSSPSSSNYHQVTGYAHTESNPNP 304
           PPRWI+  +  S      V  +   +  P P
Sbjct: 709 PPRWIVEPTDVSVERNKHVALHCQAQGVPTP 739


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 212 PPRWILSTSSPSSSNYHQVTGYAHTESNPNP 304
           PPRWI+  +  S      V  +   +  P P
Sbjct: 705 PPRWIVEPTDVSVERNKHVALHCQAQGVPTP 735


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 257 YHQVTGYAHTESNPNPGTSQA 319
           YHQ   +    S+ NPGT QA
Sbjct: 9   YHQQFHHQQLFSSANPGTIQA 29


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -2

Query: 857 SSWGKIWGKPVNQIXKVNPKFPGFISK--NKPLD 762
           SS+GKI          V PKFP  I +  N  LD
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLD 380


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 9   DRNGNTGMSSNNLDGNQQQLNAQVNNPSQN 98
           ++N N   ++N  D NQ+      NN   N
Sbjct: 418 NQNDNIQNTNNQNDNNQKNNKKNANNQKNN 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,880
Number of Sequences: 438
Number of extensions: 5448
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)