Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40009
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27010.1 68417.m03885 expressed protein  ; expression support...    30   2.3  
At1g69560.1 68414.m07999 myb family transcription factor (MYB105...    28   7.1  
At4g39440.1 68417.m05581 expressed protein  ; expression support...    28   9.4  
At3g62720.1 68416.m07045 galactosyl transferase GMA12/MNN10 fami...    28   9.4  

>At4g27010.1 68417.m03885 expressed protein  ; expression supported
           by MPSS
          Length = 2535

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 847 GKFGGNLLTKFXR*TPNFRDLFPKINPWIFNHTTSGPQQLYIIIRN*SLSPQSNWRS 677
           G+ GG+LL  + + +PNF +L   +  W   H   G   ++ +I+     P+   RS
Sbjct: 56  GETGGDLLRLYFQSSPNFAEL---LEAWKLRHEKQGLSYIFSLIQTILSHPEGKDRS 109


>At1g69560.1 68414.m07999 myb family transcription factor (MYB105)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 330

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 96  NVEIKGCFPSSTETSRLNHLYNLQQH 173
           ++ I  CFPSS  +S  +H YN QQH
Sbjct: 10  SLSITPCFPSSLSSSS-HHHYNQQQH 34


>At4g39440.1 68417.m05581 expressed protein  ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 438 VVCFISGASSLTSRGNVEELIELDSCFTEGEFS 340
           VVC +   ++L     +E+L+EL++C   G+ +
Sbjct: 404 VVCALLSCTTLLQLSGIEDLVELNTCTVIGDIT 436


>At3g62720.1 68416.m07045 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 460

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 839 WGKPVNQIXKVNPKFPGFISKNKP 768
           W +      K NP FP F++ NKP
Sbjct: 126 WDEQRRDWLKQNPSFPNFVAPNKP 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,516,947
Number of Sequences: 28952
Number of extensions: 420843
Number of successful extensions: 1098
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)