Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40008
         (473 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   0.82 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.3  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 PNTIGSRNGTGICPCICRLASGTWRLVI 351
           PN I   NGTG+     RLA+G   LV+
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIALVL 188


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 331  GTWRLVIL*RSANADLCPKQLDSMF*KFQRARARRSLSKNFNKL 462
            GT+  +I     + DLC K +D M     R+R    +  +  KL
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEMTVDELRSRDPIKIVADLQKL 1351


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 331  GTWRLVIL*RSANADLCPKQLDSMF*KFQRARARRSLSKNFNKL 462
            GT+  +I     + DLC K +D M     R+R    +  +  KL
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEMTVDELRSRDPIKIVADLQKL 1351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,970
Number of Sequences: 336
Number of extensions: 2263
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)