Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40008
(473 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 3e-29
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.052
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 28 3.4
SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064) 27 6.0
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) 27 7.9
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 27 7.9
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 124 bits (300), Expect = 3e-29
Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 16/101 (15%)
Frame = +1
Query: 1 ADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAI 132
A+QTE+A+QKQA +F NRK + K+KD+R +NVGLGFKTP REAI
Sbjct: 2 AEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAI 61
Query: 133 EGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDY 255
EGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDY
Sbjct: 62 EGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDY 102
Score = 101 bits (241), Expect = 4e-22
Identities = 39/53 (73%), Positives = 49/53 (92%)
Frame = +3
Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
LHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 103 LHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 345 GDIVTIGECRPLSKTVRFNVLKV 413
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 148 QCRYPQSPLWEF*SLNQHSYGDACP 74
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 222 DAENYRDPPRLLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 344
D + Y PPRL+H+ + ++ ++ H+ F D E+
Sbjct: 54 DTDRYLPPPRLIHHAERGSKLQQDASQYQHHVKGNFSDDEL 94
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 338 HVPEARRQMHGHIPVPFLEP 279
HV +A R HG++P+P L P
Sbjct: 82 HVDQACRSFHGNLPLPVLAP 101
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 16 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 192
+A + T ++RK K+K+ + KN+ K PR T++ + G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275
Query: 193 ILTGVVQK 216
G Q+
Sbjct: 276 ARAGNAQR 283
>SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 186 SDRNVTSEGTLLVNVGTLNRLSGSFEA*TNILMVTH 79
SDR +T++ TLL++ G+ + F ++L+ H
Sbjct: 103 SDRQITTDSTLLIDTGSQYKYVTRFHRNDDLLLYNH 138
>SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)
Length = 285
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 261 SEVIAADHDSSLHLHFLNDAGEDAASDRNVTSEGTLLVNVGT 136
+ V+ DH+ ++ + F+ D+G D + R+ E L +GT
Sbjct: 182 ASVLPPDHNQTVQVKFMVDSGSDVTTLRHDVIERLGLPRIGT 223
>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
Length = 1086
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = -3
Query: 372 CIRRSLQYHQSPRP*SKATNARTYSCAVSRTYCIWVGSEVIAADHDSSLHLHFLNDAGED 193
C R + Y RP K + S + T SE +AD SSL +H +
Sbjct: 691 CARTDVVYEHPERPKPKEGPRSSESSTANSTATRTEASESNSADRQSSLSVHRQSPKNTP 750
Query: 192 AAS 184
AAS
Sbjct: 751 AAS 753
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 34 ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRG-RILTGVV 210
A F KG D+ H + G + +E K C F G++ +RG +++G V
Sbjct: 11 AKAFAAVKGKKTLPDLHHVTSKDCGRGVHSDGLETPLTIKNCVFAGSM-VRGIDVVSGHV 69
Query: 211 QKMKMQRTIVIRRDYFTTYPNTIGSRNGTG 300
+ ++ T+V+ TT +G R G G
Sbjct: 70 -SLTIRDTLVVN----TTNGGGLGIRQGAG 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,387
Number of Sequences: 59808
Number of extensions: 292615
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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