Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40008
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   119   1e-27
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           116   6e-27
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           112   1e-25
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.53 
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.53 
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,...    28   2.8  
At5g04440.1 68418.m00441 expressed protein                             28   3.7  
At4g26980.1 68417.m03882 expressed protein                             27   4.9  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.6  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  119 bits (286), Expect = 1e-27
 Identities = 60/90 (66%), Positives = 67/90 (74%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPF 61

Query: 166 TGNVSIRGRILTGVVQKMKMQRTIVIRRDY 255
           TG VSIRGRIL+G     KMQRTI++RRDY
Sbjct: 62  TGTVSIRGRILSGTCHSAKMQRTIIVRRDY 91



 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY R+EKRH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  116 bits (280), Expect = 6e-27
 Identities = 58/90 (64%), Positives = 65/90 (72%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPF 61

Query: 166 TGNVSIRGRILTGVVQKMKMQRTIVIRRDY 255
           TG VSIRGRIL G     KMQRTI++RRDY
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRDY 91



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/53 (67%), Positives = 44/53 (83%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY R+EKRH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  112 bits (270), Expect = 1e-25
 Identities = 58/90 (64%), Positives = 65/90 (72%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   ADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPF 165
           A+QTEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPF
Sbjct: 2   AEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPF 61

Query: 166 TGNVSIRGRILTGVVQKMKMQRTIVIRRDY 255
           TG VSIRGRIL G     KMQRTI++RR+Y
Sbjct: 62  TGTVSIRGRILAGTCHSAKMQRTIIVRRNY 91



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 37/53 (69%), Positives = 44/53 (83%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++ KY R+EKRH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 43  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 171
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 267 PKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           PKY R  +  +    H  P     ++GD+V + + RP+SKT  F  L V
Sbjct: 77  PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSFVALPV 123


>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 609

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 128 RLRVPTLTRSVPSLVTFRSEAASSPASFRK 217
           R   PT TR  PS +  R+  +SSP SF K
Sbjct: 52  RSPTPTKTRRCPSPIVTRTAPSSSPESFLK 81


>At5g04440.1 68418.m00441 expressed protein
          Length = 255

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 297 CAVSRTYCIWVGSEVIAADHD---SSLHLHFLNDAGEDAASDRNVTSEGTLLVNV 142
           C +    C   GS V+ A +D   +S+      D+ ++ +S++ +TS+  + VN+
Sbjct: 142 CCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNI 196


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 112 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 216
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 327 SKATNARTYSCAVSRTYCIWVGSEVIAADHDSSLHLHFLNDAG 199
           SK    + YSC +S  +  WV    +AA H+ S  + ++   G
Sbjct: 96  SKIIEEKRYSCIISSPFTPWV--PAVAASHNISCAILWIQACG 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,122,720
Number of Sequences: 28952
Number of extensions: 206960
Number of successful extensions: 483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)