Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40007
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.7  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 286 DCSNSSSGTSYPTVAAPAPMNLAAESM 206
           DC+ +SS    P   AP  ++LAA  +
Sbjct: 30  DCTTASSWPGRPPKRAPVGLSLAASHL 56


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 374 QTRRNPEWRMRTT 336
           QTRRNP +R RT+
Sbjct: 226 QTRRNPYYRPRTS 238


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 582 DAHCRCKTHQSLHHYEGKVS 523
           D HC CK      H E KV+
Sbjct: 321 DYHCNCKLGFMGRHCESKVN 340


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 196 SLRTLTLLPNSLVLVQRQWDSWFRS 270
           ++R    L NSL L +RQ   WF++
Sbjct: 182 TIRRKAELANSLGLSERQVKIWFQN 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,099
Number of Sequences: 336
Number of extensions: 3510
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)