Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40007
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    40   2e-04
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    27   3.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   4.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   4.2  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    26   5.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   5.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.3  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   9.6  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +2

Query: 284 VFGSLIIGYARNPSLKXQWFSYAILGFALSE 376
           +F +LI G +RNPS++   FS AILGFAL+E
Sbjct: 27  IFSNLISGTSRNPSVRPHLFSMAILGFALTE 57



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 216 AAKFIGAGAATVG 254
           AAK+IGAG AT+G
Sbjct: 4   AAKYIGAGLATIG 16


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 423 AKSSRNAIIRQNRPIASDKAKPRMAYENHCXLREGFLA*PMMREPKTVPIPAPEPAIPLS 244
           ++++ + ++    P A++    R+AY N      G L+        T PIP   P+ P+ 
Sbjct: 83  SRNNVSPVLTDLPPYAAEHPFSRLAYFNPAFNSPGILS----ASGLTSPIPESRPSTPMD 138

Query: 243 LHQHQ 229
            HQ +
Sbjct: 139 NHQER 143


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 250 WDSWFRSWNWNSLRLPHH 303
           WDS+ R   W+ +++P H
Sbjct: 218 WDSFIRRAKWSGVKIPQH 235


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 232 VLVQRQWDSWFRSWNWNSLRLPHHRL 309
           VL   + DS  R+WNW S  L  H L
Sbjct: 414 VLTAHKNDSSARTWNWKSKTLGQHVL 439


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 480 QCILSGVDSQESNVWKP 530
           QCI S  D  E ++WKP
Sbjct: 387 QCIASVADDNELHIWKP 403


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 126 HPYTDGNAVPTQLSAVRSFQTTSVTKDID 212
           H Y    AVP  L A   F TTS  + +D
Sbjct: 514 HTYVSTYAVPNVLQAQVGFNTTSAPETVD 542


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 552 TDVFYTYSARQQE*NLFKLXSIKQKSF 632
           TDV+Y  S  +++  +FKL S+  K +
Sbjct: 16  TDVYYKISGWREQEGIFKLLSVNPKLY 42


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 193 RSLRTLTLLPNSLVLVQRQWDSWFR 267
           +S   L L+P+   L +++WDSWF+
Sbjct: 411 KSSNKLKLVPS---LARKEWDSWFK 432


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 292 AEDCSNSSSGTSYPTVAAP 236
           A D S  SSGTS P +AAP
Sbjct: 648 AGDTSKVSSGTSTPRMAAP 666


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 281 FQFQLRNQLSHCRCTSTNEFGSRVN 207
           F + L  QLS  +CTS   F  + N
Sbjct: 763 FNYDLPEQLSRLKCTSKANFAKKEN 787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,318
Number of Sequences: 5004
Number of extensions: 53489
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)