Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40007
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0109 - 11919279-11920109 29 2.5
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 3.3
12_02_0521 - 19955475-19956076,19957146-19958403 29 4.3
12_01_0686 - 5855216-5858263 29 4.3
03_05_0292 + 22846273-22846377,22847161-22847823 29 4.3
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 4.3
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 5.7
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 28 7.5
08_02_0263 + 15007377-15007650,15008050-15008116,15008616-150086... 28 7.5
03_01_0517 - 3874834-3875196 28 7.5
09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779 27 9.9
07_03_1423 + 26466550-26467110 27 9.9
04_04_1482 - 33903276-33903374,33903475-33903600,33904110-339043... 27 9.9
>06_02_0109 - 11919279-11920109
Length = 276
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 176 PXCRELCRDSITICVWVVYCCKWSHQCRVAEDGRPGCRGDQSG 48
P R+ RD++ WVV+ +W H R+ P SG
Sbjct: 199 PLLRDDLRDALRDARWVVWYSQWYHLSRMPSPSSPQASSTSSG 241
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 475 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EPLLLEGGVPGIADDE 296
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 295 GAEDCSNSSSGTSYPT 248
GAE S SS+ + PT
Sbjct: 391 GAE--SVSSNARAQPT 404
>12_02_0521 - 19955475-19956076,19957146-19958403
Length = 619
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Frame = -3
Query: 215 RVNVLSDRCGLEGPXCRELCRD---SITICVWVV--YCCKWSHQCRVAEDGRPGCRGDQS 51
R NV S+R G +C + C W+ +C W+H DG+ G
Sbjct: 268 RCNVCSNRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAIRDGQIGMGQSIK 327
Query: 50 GGRQHF-VFIRCGARQQ 3
G H + RC A Q+
Sbjct: 328 SGTGHAEMLFRCQACQK 344
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 100 WCDHLQQYTTHTQMVMLSLHSSLQXGPSRPHRSLRTLTLL 219
WCDH+ +YT Q++ L + SL ++R+LT +
Sbjct: 233 WCDHIAKYTPKLQVLSLP-YCSLSGPVCASFAAMRSLTTI 271
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 232 VLVQRQWDSWFRSWNWNSLRLPHHRLC 312
VLV + SW R W+W R R+C
Sbjct: 152 VLVDERRRSWRRQWSWRRRRRRRSRMC 178
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 43 LPPD*SPLQPGLPSSATLHWCDHLQQYTTHTQMVMLSLHSSLQXGPSRPHRS--LRTLTL 216
+PP PL+P +PSS+ H LQ + + +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQA----VKSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 217 LPNS 228
+PN+
Sbjct: 239 MPNA 242
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 436 NSLESEEQQERHHKTEQTHSLRQ 368
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 283 CSNSSSGTS-YPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTALP-SVYG 128
C+ + G S +P+V P AAE+M+ DV + R ES +P SV+G
Sbjct: 387 CNKAEGGISVFPSVRLPPRAIEAAEAMNTEPDVFYALRLLESTGIVVVPGSVFG 440
>08_02_0263 +
15007377-15007650,15008050-15008116,15008616-15008676,
15008964-15009005
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 289 EDCSNSSSGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTALPS 137
E + G++ PTVAAPA + A + +V DR C G A PS
Sbjct: 2 ETLAPDGGGSADPTVAAPAATDPAVAGQTEANPMVAVDRLVVVC-GCAPPS 51
>03_01_0517 - 3874834-3875196
Length = 120
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 429 KLFTFKNTTTAILHMRFQCILSGVDSQESNVWK 527
+L TT +FQC++ GV +N WK
Sbjct: 81 RLVILAETTPGGSKAKFQCVVWGVPGSRANTWK 113
>09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779
Length = 106
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 306 PMMREPKTVPIPAPEPAIP 250
P ++E KT+P+PAP A P
Sbjct: 84 PQVKEKKTLPLPAPAAAPP 102
>07_03_1423 + 26466550-26467110
Length = 186
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 286 DCSNSSSGTSYPTVAAPAPMNLAAESMSLV-TDVVWKDRTAESCVGTALP 140
D SNS++ ++ VA+PA + AA++ ++ T VV+ D E +ALP
Sbjct: 59 DFSNSTANSTSAVVASPAALLRAAKNTTIFGTTVVFNDPMTEGT--SALP 106
>04_04_1482 -
33903276-33903374,33903475-33903600,33904110-33904351,
33904388-33904626,33904798-33904961,33905738-33906520
Length = 550
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -3
Query: 197 DRCGLEGPXCRELCRDSITICVWVVYCCKWSHQCRVAEDGRPGCRGDQSGG 45
D G EG EL I + +W+ + WS PG G Q GG
Sbjct: 138 DGAGGEGKVVGELAPGEIAVLLWMCWVMAWS-------GSAPGVSGGQEGG 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,865
Number of Sequences: 37544
Number of extensions: 399876
Number of successful extensions: 1543
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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