Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40007
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su... 44 9e-05
At2g10340.1 68415.m01086 hypothetical protein 32 0.39
At3g18215.1 68416.m02317 expressed protein contains Pfam profile... 29 2.7
At3g14170.1 68416.m01791 expressed protein 29 2.7
At3g26080.1 68416.m03247 plastid-lipid associated protein PAP / ... 28 4.8
At5g22110.1 68418.m02574 DNA polymerase epsilon subunit B family... 28 6.3
At4g33740.2 68417.m04791 expressed protein 28 6.3
At4g33740.1 68417.m04790 expressed protein 28 6.3
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic... 28 6.3
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic... 28 6.3
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 28 6.3
At1g29220.1 68414.m03574 transcriptional regulator family protei... 28 6.3
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 27 8.3
>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
subunit family protein similar to ATPase subunit 9
[Arabidopsis thaliana] GI:15215920; contains Pfam
profile PF00137: ATP synthase subunit C
Length = 85
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/31 (70%), Positives = 23/31 (74%)
Frame = +2
Query: 284 VFGSLIIGYARNPSLKXQWFSYAILGFALSE 376
VF SLI ARNPSL Q F YAILGFAL+E
Sbjct: 38 VFSSLIHSVARNPSLAKQSFGYAILGFALTE 68
>At2g10340.1 68415.m01086 hypothetical protein
Length = 85
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 334 LLEGGVPGIADDEGAEDCSNSSSGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCV 155
LL GG P A + A+ + + PT A AP++L+ E + + V KD +
Sbjct: 22 LLTGGDPPSAAELAAKTVEDQLPREANPTAPAVAPLSLSLEDLKAILATVTKDLSQRLTA 81
Query: 154 GT 149
G+
Sbjct: 82 GS 83
>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
PF04654: Protein of unknown function, DUF599
Length = 244
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 354 FWVSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAIL-HMRFQCILSGVDSQESNV 521
F+ S L LW + CC +S + F +TTT+ H+ Q DS + +
Sbjct: 181 FYFSFPLFLWTFGPIPMFVCCCMMSSILYFLDTTTSFTRHLHSQSFRETADSMDGEI 237
>At3g14170.1 68416.m01791 expressed protein
Length = 484
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +1
Query: 76 LPSSATLHWCDHLQQYTTHTQMVMLSLHSSLQXGPSRPHRSLRTLTLLPNSL----VLVQ 243
LP HW H+ + LS ++S P PH SLR L + L V V
Sbjct: 265 LPKCKERHWLLHISSNASGNMFAELSSNAS----PKNPHTSLRNFFTLQSILDQVQVTVV 320
Query: 244 RQWDSWFRSWNWNSLRLPHHRLCQE 318
D F+ N +SL + +L ++
Sbjct: 321 ASKDKSFQPVNIHSLWMEPEKLSKK 345
>At3g26080.1 68416.m03247 plastid-lipid associated protein PAP /
fibrillin family protein low similarity to
Plastid-lipid-Associated Protein [Nicotiana tabacum]
GI:2632088; contains Pfam profile PF04755: PAP_fibrillin
Length = 234
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 99 LVRPLAAVHHPYTDGNAVPTQLSAVR 176
L P A +HP G AVPT+L ++R
Sbjct: 12 LTSPAAGFNHPSDSGFAVPTKLLSIR 37
>At5g22110.1 68418.m02574 DNA polymerase epsilon subunit B family
contains Pfam profile: PF04042 DNA polymerase epsilon
subunit B
Length = 523
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 178 PSRPHRSLRTLTLLPNSLVLVQRQWDSWFRSWNWNSLRLPHH 303
P P S +L ++ ++ ++ + ++D W R + W++ LP H
Sbjct: 85 PEEPTTSASSLAII-DAFLVPKDEFDRWLRVYVWHTSSLPIH 125
>At4g33740.2 68417.m04791 expressed protein
Length = 227
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -3
Query: 188 GLEGPXCRELCRDSITICVWVVYCCKWSH 102
G++G ++C + +C+W++Y K+SH
Sbjct: 14 GIKGKHVLQICV-LLGVCIWLIYQVKYSH 41
>At4g33740.1 68417.m04790 expressed protein
Length = 227
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -3
Query: 188 GLEGPXCRELCRDSITICVWVVYCCKWSH 102
G++G ++C + +C+W++Y K+SH
Sbjct: 14 GIKGKHVLQICV-LLGVCIWLIYQVKYSH 41
>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 344
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 185 LEG-PXCRELCRDSITICVWVVYCCKWSH-QCRVAE 84
LEG P R+ S +C+W +YCC + C AE
Sbjct: 280 LEGKPYNRKCDVYSFGVCLWEIYCCDMPYADCSFAE 315
>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 391
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 185 LEG-PXCRELCRDSITICVWVVYCCKWSH-QCRVAE 84
LEG P R+ S +C+W +YCC + C AE
Sbjct: 280 LEGKPYNRKCDVYSFGVCLWEIYCCDMPYADCSFAE 315
>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
similar to GP|2435515|AF024504; contains Pfam profile
PF03107: DC1 domain
Length = 247
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -3
Query: 164 ELCRDSITICVWVVYC--CKWS---HQCRVAEDGRPGCRGDQSGGRQ 39
++C + ++ +WV YC C + H C V ED RG GGR+
Sbjct: 153 DVCEEKMSENLWVYYCKECDYGTHVHSCAVYEDHESEKRG---GGRE 196
>At1g29220.1 68414.m03574 transcriptional regulator family protein
similar to Transcriptional regulator protein HCNGP
(Swiss-Prot:Q02614) [Mus musculus]
Length = 351
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -1
Query: 322 GVPGIADDEGAEDCSNSSSGTSYPTVAAPAPMNLAAESMSLVTD 191
G G+AD E +D S SS T P P +E + D
Sbjct: 107 GESGVADGERGDDASGESSDTLLDQFLPPRPRERCSEELQRKID 150
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 157 HSSLQXGPSRPHRSLRTLTLLPNSLVLVQRQWDSWFRSW 273
+ S + PS P S+ +L+ P + +LV WD+ R W
Sbjct: 15 NKSYEVTPS-PADSISSLSFSPRADILVATSWDNQVRCW 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,926
Number of Sequences: 28952
Number of extensions: 297247
Number of successful extensions: 982
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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