Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40006
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = -1

Query: 304 GESGSSADCPRAALPGANQVSVEKP------DWSTVPFIMADQGPVRRRI 173
           G+   SA  P   +P  + +S   P         T+P + +  GP+RRRI
Sbjct: 407 GQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRRRI 456


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/58 (17%), Positives = 23/58 (39%)
 Frame = +1

Query: 316 RHCAGQGFRFTRNRQIRFTSDHLFHRICRITSSKFNLHRRVFRAEGFQNRRQMAVGSG 489
           ++C     R + +  ++ T  H F ++C +      +       + F  RR + +  G
Sbjct: 108 KNCVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKEFWERRALQISEG 165


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 367 SGSGDCG*TGNLARRSGVFDAGESGSSAD 281
           +G+ +C  T ++A  SGV  AGE G +AD
Sbjct: 153 NGTVNC--TSSIAS-SGVVSAGECGPAAD 178


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = -2

Query: 99  YRWWHSAVAWHC 64
           Y WW   + W C
Sbjct: 524 YPWWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = -2

Query: 99  YRWWHSAVAWHC 64
           Y WW   + W C
Sbjct: 577 YPWWSHVLGWLC 588


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 432  TGVPRGRIPESAADGCRQRSPSRRYVFARXRRPLLID 542
            TG+PR +   + A   +Q++ S++ +    R   LID
Sbjct: 1294 TGIPRDQRAMTEARNQQQQASSQQQIPESMRSKALID 1330


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 119 WRA*SDGIDGGTRLWRGIVAGSGAGKQ 39
           W   + GI     L  G   G G GKQ
Sbjct: 154 WEVYTKGIGAKLLLQMGFEPGKGLGKQ 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,775
Number of Sequences: 438
Number of extensions: 4339
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)