BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40006 (547 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 33 0.16 At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 33 0.16 At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 32 0.29 At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 30 0.88 At5g27870.1 68418.m03343 pectinesterase family protein similar t... 30 1.2 At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 29 1.5 At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 1.5 At5g46380.1 68418.m05708 hypothetical protein 29 2.0 At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 29 2.7 At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 28 3.5 At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 28 3.5 At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot... 28 4.7 At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 4.7 At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 28 4.7 At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18... 28 4.7 At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel... 27 6.2 At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 27 6.2 At5g52680.1 68418.m06540 heavy-metal-associated domain-containin... 27 8.2 At5g37040.1 68418.m04442 F-box family protein contains Pfam prof... 27 8.2 At5g01090.1 68418.m00013 legume lectin family protein contains P... 27 8.2 At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 27 8.2 At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 27 8.2 At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 27 8.2 At3g13460.2 68416.m01694 expressed protein contains Pfam profile... 27 8.2 At3g13460.1 68416.m01693 expressed protein contains Pfam profile... 27 8.2 At2g31020.1 68415.m03782 oxysterol-binding family protein simila... 27 8.2 At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi... 27 8.2 At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F... 24 8.8 At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F... 24 8.8 >At5g54650.2 68418.m06805 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 32.7 bits (71), Expect = 0.16 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 16 RGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKSS 138 R A G P+P P+ P+ SR PP P+ P RKSS Sbjct: 136 RNLATKPGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSS 176 >At5g54650.1 68418.m06804 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 32.7 bits (71), Expect = 0.16 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +1 Query: 16 RGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKSS 138 R A G P+P P+ P+ SR PP P+ P RKSS Sbjct: 136 RNLATKPGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSS 176 >At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat family protein similar to Vegetatible incompatibility protein HET-E-1 (SP:Q00808) {Podospora anserina}; contains 5 WD-40 repeats (PF00400); similar to beta transducin-like protein HET-E2C*4 (GP:17225206)[Podospora anserina] Length = 530 Score = 31.9 bits (69), Expect = 0.29 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +2 Query: 299 FSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGCSARK 451 +SS +N + P VS + A+A SPV S+A A S VSL S+ S+ + Sbjct: 40 WSSFKNHSTPNLVSSVAALA--FSPVHPHSLAVAHSATVSLFSSQSLSSSR 88 >At5g07760.1 68418.m00888 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 853 Score = 30.3 bits (65), Expect = 0.88 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +3 Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLP 401 RG+ L P P P+RR R P+ P P P+ + P P P Sbjct: 18 RGRVPLPPPPPPPPPPMRR-RAPLPPPPPPPMRRRAPLPPPPP 59 >At5g27870.1 68418.m03343 pectinesterase family protein similar to pectinesterase (EC 3.1.1.11) from Salix gilgiana GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF01095 pectinesterase Length = 732 Score = 29.9 bits (64), Expect = 1.2 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = +2 Query: 245 HLISTGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLI 424 HL S + ++ +A S+ +A+ S P+ + SASP + S++ +ASP S Sbjct: 669 HLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSASPSVSPSASPSASPQ 728 Query: 425 STDG 436 S+ G Sbjct: 729 SSIG 732 >At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical to gi_11935088_gb_AAG41964 Length = 209 Score = 29.5 bits (63), Expect = 1.5 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 294 PDSPASKTPLRRARFPVY-PQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGVPRGRIPESA 467 P + +KTP A PV P+SP P+ + P P+ +P SPP P P S+ Sbjct: 51 PTTAPAKTPTASASSPVESPKSPAPVSESSPPPTPVPES-----SPPVPAPMVSSPVSS 104 >At2g15880.1 68415.m01820 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 727 Score = 29.5 bits (63), Expect = 1.5 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +3 Query: 294 PDSPASKTPLRRARFP----VY-PQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGVP 443 P+ P ++P++ R P V+ P P P+H PP P + P V SPP P Sbjct: 478 PNDPYDQSPVKFRRSPPPPPVHSPPPPSPIHSPPPPPVYSPPPPPPVYSPPPPPP 532 >At5g46380.1 68418.m05708 hypothetical protein Length = 607 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = -1 Query: 244 SVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHEAMVSMVAL 83 S++ P+ +T P M Q R + W+ + ++ M A+ G VSM + Sbjct: 376 SLQMPNLNTFPDSMHQQAFTREHVNAWYSASPLNQSMYAASSLGRRLPVSMTEM 429 >At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty acid multifunctional protein (AIM1) identical to gi:4337025; contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase) Length = 721 Score = 28.7 bits (61), Expect = 2.7 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Frame = -2 Query: 477 SHLPPILESFRAEHPSVEIKLTTGDAADAMEK--VVTGEADLAIAGKPETLPGAVAFSML 304 +HL P+LE R+++ S ++ L A++K VV G + A P + A ML Sbjct: 451 AHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVVGNC-IGFAVNRTFFPYSQAAHML 509 Query: 303 ENLAVVL 283 NL V L Sbjct: 510 ANLGVDL 516 >At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta) {Arabidopsis thaliana}; contains Pfam profiles: PF00614 phospholipase D.active site motif, PF00168 C2 domain Length = 1083 Score = 28.3 bits (60), Expect = 3.5 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = +3 Query: 303 PASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ 410 P P + P YP P P PP+ S P HQ Sbjct: 32 PYPPPPTNQYSAPYYPYPPPPYATPPPYASPPPPHQ 67 >At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965; Length = 185 Score = 28.3 bits (60), Expect = 3.5 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +3 Query: 267 AARGQSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHL 398 AA G + + P ++P + P P+SP P PP PS L Sbjct: 135 AAAGTTTIAGQPPPPESPPPESLPPPSPESPSPPSPEPPPPSSL 178 >At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein similar to lipase [Arabidopsis thaliana] GI:1145627; contains Pfam profile:PF00657 Lipase/Acylhydrolase with GDSL-like motif Length = 323 Score = 27.9 bits (59), Expect = 4.7 Identities = 15/52 (28%), Positives = 21/52 (40%) Frame = +2 Query: 38 AVFQHHFRQQCHATAECHHRYHRFMPANRGVNHRVTDFIASKPQFNAAAYRP 193 A F+ H R CH ++ ++ FM G N F KP +Y P Sbjct: 100 AWFKGHLRSTCHGSSSDCLKHSLFMVGEIGGNDYNYGFFQGKPMEEIRSYIP 151 >At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-glycoprotein homologue GI:2292907 from [Hordeum vulgare subsp. vulgare] Length = 1225 Score = 27.9 bits (59), Expect = 4.7 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 396 DAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVV 286 DA+E+++ G + IA + T+ ++LEN AVV Sbjct: 1161 DALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVV 1197 >At3g18890.1 68416.m02399 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI:20339364 Length = 641 Score = 27.9 bits (59), Expect = 4.7 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 296 RFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASP 409 RFS +N + GK R++ P+ S+ + ASP Sbjct: 36 RFSGFKNHSVSGKSRSFDLSLRASGPIRASSVVTEASP 73 >At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18 (CLE18) Length = 101 Score = 27.9 bits (59), Expect = 4.7 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +3 Query: 348 PQSPDPLHQ*PPFPSHLPHH 407 P PDPLH PP PS HH Sbjct: 40 PTGPDPLHN-PPQPSPKHHH 58 >At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC1) almost identical to cyclic nucleotide-regulated ion channel 1 pir:T51354, GI:11357236 from [Arabidopsis thaliana] Length = 716 Score = 27.5 bits (58), Expect = 6.2 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 355 RQIRFTSDHLFHRICRITSSKFNLHRRVFRAEGFQNRRQMAVGSGHRAEDMYSP 516 R I SD F+R +S++ L +R +++ F+ +GS H+ D P Sbjct: 38 RTISSISDK-FYRSFESSSARIKLFKRSYKSYSFKEAVSKGIGSTHKILDPQGP 90 >At3g14810.1 68416.m01871 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel Length = 853 Score = 27.5 bits (58), Expect = 6.2 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = -1 Query: 328 RRSGVFDAGESGSSADCPRAALPGANQVSVEKPDWSTVPFIMADQGPVRRRIELWF 161 RRSG+F +G G S P+A PG N E+ + PF+ D +R +L F Sbjct: 218 RRSGIFKSGFLGKS---PKAGTPGRNGFEEEEEE---DPFLDEDLPEEFKRDKLSF 267 >At5g52680.1 68418.m06540 heavy-metal-associated domain-containing protein low similarity to pneumococcal surface protein A PspA [Streptococcus pneumoniae] GI:7800654; contains Pfam profile PF00403: Heavy-metal-associated domain Length = 238 Score = 27.1 bits (57), Expect = 8.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 1 ALKSSRGYAPVRGCFPAPLPATMPRHSRVPPSIPS 105 A K+SR APV P PA P+ + PPS+P+ Sbjct: 177 ARKTSRVPAPV----PVRAPAPTPKPAPAPPSVPA 207 >At5g37040.1 68418.m04442 F-box family protein contains Pfam profile: PF00646 F-box domain Length = 242 Score = 27.1 bits (57), Expect = 8.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -1 Query: 211 FIMADQGPVRRRIELWFRRNKISN 140 F + +Q R+IE+W +NKI N Sbjct: 138 FSVLEQSKKTRKIEIWVTKNKIGN 161 >At5g01090.1 68418.m00013 legume lectin family protein contains Pfam domain, PF00139: Legume lectins beta domain Length = 353 Score = 27.1 bits (57), Expect = 8.2 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 453 SFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGK 343 SF+ HPS+ I D D + V GE + + GK Sbjct: 250 SFKLRHPSMRIHSQPLDPNDVSKTVKEGEKTVEVKGK 286 >At4g34150.1 68417.m04846 C2 domain-containing protein similar to calcium-dependent protein kinase [Dunaliella tertiolecta] GI:6644464; contains Pfam profile PF00168: C2 domain Length = 247 Score = 27.1 bits (57), Expect = 8.2 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +1 Query: 10 SSRGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPW 126 S+ GY P+ +P P P++ PP PS + + P+ Sbjct: 201 STSGYPPIPSAYPPPPPSSAYPPQPYPPQ-PSYYPQGPY 238 >At4g13390.1 68417.m02092 proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 429 Score = 27.1 bits (57), Expect = 8.2 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +3 Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQSPDP-LHQ*P-PFPSHLPHHQ**V*SPP 431 + S L +SP P R + P Y P+P ++ P P P + P + + SPP Sbjct: 45 KNYSPYLSESPPPPPPQYRRQEPKYTPHPEPNVYDSPTPLPYYFPFPKLDIKSPP 99 >At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family protein Length = 477 Score = 27.1 bits (57), Expect = 8.2 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Frame = +3 Query: 264 RAARGQSALLPDS-PASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGV 440 R +G SAL + P + P R P P P H P S LPH V Sbjct: 384 RRPKGNSALNHHTAPPTPAPHRSQPHPPAPNPAPPRHHAIPVSSPLPH----VVFAHIPP 439 Query: 441 PRGRIPESAADGCRQRSPS 497 P PES G + SP+ Sbjct: 440 PSKSSPESEPTGEKSPSPA 458 >At3g13460.2 68416.m01694 expressed protein contains Pfam profile PF04146: YT521-B-like family Length = 664 Score = 27.1 bits (57), Expect = 8.2 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +2 Query: 311 ENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGC 439 E+ATA PA +++S V S A PV + +GC Sbjct: 622 ESATAESASKESPAAVQTSSDVKVAENGSVAKPVTGDVVANGC 664 >At3g13460.1 68416.m01693 expressed protein contains Pfam profile PF04146: YT521-B-like family Length = 667 Score = 27.1 bits (57), Expect = 8.2 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +2 Query: 311 ENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGC 439 E+ATA PA +++S V S A PV + +GC Sbjct: 625 ESATAESASKESPAAVQTSSDVKVAENGSVAKPVTGDVVANGC 667 >At2g31020.1 68415.m03782 oxysterol-binding family protein similar to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens}; contains Pfam profiles PF00169: PH domain, PF01237: Oxysterol-binding protein Length = 760 Score = 27.1 bits (57), Expect = 8.2 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -1 Query: 220 TVPFIMADQGPVRRRIELWFRRNKISNPMIY 128 ++ ++M DQG V LW R + NP Y Sbjct: 622 SIHYVMVDQGKVNESHLLWKRNKQPENPTKY 652 >At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 570 Score = 27.1 bits (57), Expect = 8.2 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +2 Query: 416 SLIST-DGCSARKDSRIGGRWL*AAVTEQKICIRQXATALADRWC 547 +++ST CSA K+ IG R VTE ++ +R AL D +C Sbjct: 150 TIVSTLSACSALKNLEIGERIYRFVVTEFEMSVR-IGNALVDMFC 193 >At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding protein-like f-AtMBP [Arabidopsis thaliana]; similar to myrosinase binding protein GI:1711295 from [Brassica napus]; contains Pfam PF01419: Jacalin-like lectin domain; identical to cDNA myrosinase-binding protein-like protein (MBP1.2) GI:6760446 Length = 642 Score = 23.8 bits (49), Expect(2) = 8.8 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +1 Query: 22 YAPVRGCFPAPLPATMPRHSRVPPSIPS 105 +AP+ PAP PA P + P P+ Sbjct: 289 FAPLPAPTPAPAPAPAPAPAPAPSPAPA 316 Score = 21.4 bits (43), Expect(2) = 8.8 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +1 Query: 187 PAPDRP**TAPLTSPASLPTP 249 PAP +AP+ +PA P P Sbjct: 309 PAPSPAPASAPVPAPAPTPAP 329 >At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding protein-like f-AtMBP [Arabidopsis thaliana]; similar to myrosinase binding protein GI:1711295 from [Brassica napus]; contains Pfam PF01419: Jacalin-like lectin domain; identical to cDNA myrosinase-binding protein-like protein (MBP1.2) GI:6760446 Length = 642 Score = 23.8 bits (49), Expect(2) = 8.8 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +1 Query: 22 YAPVRGCFPAPLPATMPRHSRVPPSIPS 105 +AP+ PAP PA P + P P+ Sbjct: 289 FAPLPAPTPAPAPAPAPAPAPAPSPAPA 316 Score = 21.4 bits (43), Expect(2) = 8.8 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +1 Query: 187 PAPDRP**TAPLTSPASLPTP 249 PAP +AP+ +PA P P Sbjct: 309 PAPSPAPASAPVPAPAPTPAP 329 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,806,174 Number of Sequences: 28952 Number of extensions: 335096 Number of successful extensions: 1293 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1284 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1023490624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -