BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40005 (718 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791... 52 5e-07 10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193 30 1.6 08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 29 2.8 04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003... 29 2.8 04_03_0451 - 16035346-16035361,16035463-16035617,16035784-160358... 28 8.5 >02_05_0981 - 33278735-33278746,33278882-33279022,33279145-33279199, 33279787-33279950,33280043-33280139,33280507-33280678, 33281107-33281182,33281545-33281661,33281928-33282007, 33282225-33282398,33282636-33282765,33282855-33282941, 33283039-33283302,33284131-33284256 Length = 564 Score = 52.0 bits (119), Expect = 5e-07 Identities = 26/90 (28%), Positives = 44/90 (48%) Frame = +1 Query: 385 MLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLP 564 ++ I DI+ D GGSIEF+N+ T+I+ PF YD N + +C+ + Sbjct: 380 LVGISDITCDIGGSIEFVNKSTSIERPFFRYDPCTNSCHDDMEGNGVICLAVDILPTEFS 439 Query: 565 RESTDFFGDLLYPYAEDIMKSDATKPLEEH 654 +E++ FGD+L + + + L H Sbjct: 440 KEASQHFGDILSKFVARLASAKELLELPSH 469 >10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193 Length = 246 Score = 30.3 bits (65), Expect = 1.6 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +2 Query: 281 DSPKLLTIPDANTSSCRHIPRGYRRASEPRRYRTECWQSV 400 D P +I +AN + +P G S P R +CWQ + Sbjct: 57 DDPTEQSIIEANDDTVLSLPGGKAEPSTPSAGRADCWQHI 96 >08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 Length = 393 Score = 29.5 bits (63), Expect = 2.8 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 437 MNSIEPPGSADMSQIASILCGNAGAPMLFG 348 M ++ PPG+A + +A CGNA A + G Sbjct: 17 MLAVAPPGAATAAAVAGCECGNAAAAAVAG 46 >04_04_0871 + 28898262-28898534,28899552-28900015,28900242-28900356, 28900510-28901157,28901282-28901374,28901658-28901795, 28902147-28902206 Length = 596 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -1 Query: 274 PIDAVDHTDVYGAIFVSEPSSSLPRSTLRGSCGDPISDPEE 152 P D D + + G+ S PS++ P ++R + P+S P E Sbjct: 18 PADFFDSSSLLGSHPSSAPSAAEPSESIRPAAAPPLSQPSE 58 >04_03_0451 - 16035346-16035361,16035463-16035617,16035784-16035891, 16036277-16036336,16036444-16036519,16037189-16037220 Length = 148 Score = 27.9 bits (59), Expect = 8.5 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +1 Query: 559 LPRESTDFFGDLLYPYAEDIMKSDATKPLEEHKFLLRC 672 L +E+ DF L PY +D + A+K L +H F+ RC Sbjct: 111 LSKEARDFISQCLRPYPDD--RPSASK-LLDHPFVNRC 145 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,728,369 Number of Sequences: 37544 Number of extensions: 430996 Number of successful extensions: 1122 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1090 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1120 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1862792824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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