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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40005
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791...    52   5e-07
10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193           30   1.6  
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065           29   2.8  
04_04_0871 + 28898262-28898534,28899552-28900015,28900242-289003...    29   2.8  
04_03_0451 - 16035346-16035361,16035463-16035617,16035784-160358...    28   8.5  

>02_05_0981 -
           33278735-33278746,33278882-33279022,33279145-33279199,
           33279787-33279950,33280043-33280139,33280507-33280678,
           33281107-33281182,33281545-33281661,33281928-33282007,
           33282225-33282398,33282636-33282765,33282855-33282941,
           33283039-33283302,33284131-33284256
          Length = 564

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 26/90 (28%), Positives = 44/90 (48%)
 Frame = +1

Query: 385 MLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLP 564
           ++ I DI+ D GGSIEF+N+ T+I+ PF  YD   N      +    +C+       +  
Sbjct: 380 LVGISDITCDIGGSIEFVNKSTSIERPFFRYDPCTNSCHDDMEGNGVICLAVDILPTEFS 439

Query: 565 RESTDFFGDLLYPYAEDIMKSDATKPLEEH 654
           +E++  FGD+L  +   +  +     L  H
Sbjct: 440 KEASQHFGDILSKFVARLASAKELLELPSH 469


>10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193
          Length = 246

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 281 DSPKLLTIPDANTSSCRHIPRGYRRASEPRRYRTECWQSV 400
           D P   +I +AN  +   +P G    S P   R +CWQ +
Sbjct: 57  DDPTEQSIIEANDDTVLSLPGGKAEPSTPSAGRADCWQHI 96


>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
          Length = 393

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 437 MNSIEPPGSADMSQIASILCGNAGAPMLFG 348
           M ++ PPG+A  + +A   CGNA A  + G
Sbjct: 17  MLAVAPPGAATAAAVAGCECGNAAAAAVAG 46


>04_04_0871 +
           28898262-28898534,28899552-28900015,28900242-28900356,
           28900510-28901157,28901282-28901374,28901658-28901795,
           28902147-28902206
          Length = 596

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 274 PIDAVDHTDVYGAIFVSEPSSSLPRSTLRGSCGDPISDPEE 152
           P D  D + + G+   S PS++ P  ++R +   P+S P E
Sbjct: 18  PADFFDSSSLLGSHPSSAPSAAEPSESIRPAAAPPLSQPSE 58


>04_03_0451 -
           16035346-16035361,16035463-16035617,16035784-16035891,
           16036277-16036336,16036444-16036519,16037189-16037220
          Length = 148

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 559 LPRESTDFFGDLLYPYAEDIMKSDATKPLEEHKFLLRC 672
           L +E+ DF    L PY +D  +  A+K L +H F+ RC
Sbjct: 111 LSKEARDFISQCLRPYPDD--RPSASK-LLDHPFVNRC 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,369
Number of Sequences: 37544
Number of extensions: 430996
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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