Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40005
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 6e-19
SB_31035| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11769| Best HMM Match : Complex1_17_2kD (HMM E-Value=6.6) 29 5.0
SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 28 6.6
SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32) 28 6.6
SB_290| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_5065| Best HMM Match : Histone (HMM E-Value=2.6e-33) 28 8.7
SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3) 28 8.7
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25) 28 8.7
>SB_49876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 91.5 bits (217), Expect = 6e-19
Identities = 44/86 (51%), Positives = 52/86 (60%)
Frame = +1
Query: 361 GAPALPHRMLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPS 540
G P LPHR+LAICDISADP GS+EFM ECTTI+ PF LYD L
Sbjct: 248 GCPNLPHRLLAICDISADPDGSLEFMKECTTIEYPFHLYDIKTGTSQIGMAGDGVLICSI 307
Query: 541 ITCQLQLPRESTDFFGDLLYPYAEDI 618
QLPRE+TD+FG LL P+ ++
Sbjct: 308 DNVPAQLPREATDYFGKLLLPWLPEM 333
>SB_31035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 310 CEHLIMPAHTPWLPKSIGAPALPHRMLAICDISA 411
C + P TP P SIG A R+ ICDI A
Sbjct: 171 CVAAVCPPQTPTAPASIGGDAQSFRLQKICDIQA 204
>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3307
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 241 GAIFVSEPSSSLPRSTLRGSCGDPISDPE 155
G +EP + + +R GDPISDPE
Sbjct: 2553 GVKMTNEPPKGIRANIIRSYLGDPISDPE 2581
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 281 DSPKLLTIPDANTSSCRHIPRGYRRASEPRRYRTECWQSVTYQQTLE 421
D L+ P A T+ CRHIP+ Y ++ R T+C Q +T L+
Sbjct: 1817 DKHNLVVKPSA-TNYCRHIPQQYPEST--RGTTTQCLQPITRATELD 1860
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/18 (55%), Positives = 17/18 (94%)
Frame = +1
Query: 478 DADRNKDTKSSKVQEYLC 531
+A +N+DTKSS++Q++LC
Sbjct: 1382 EAIKNRDTKSSQIQQWLC 1399
>SB_11769| Best HMM Match : Complex1_17_2kD (HMM E-Value=6.6)
Length = 355
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +1
Query: 169 WGHRSFRARLSVVRRTTVQIQRSHRTHPCGQLHLLGS*QSETTHDT*CEHLIMPAHTP-- 342
W FR R VVR + HR +P +L G +++T H +L MPA P
Sbjct: 279 WAVSMFRGRNVVVRTPENDLAHDHRNNP--RLACAG--RAQTYH----HYLCMPAEKPIE 330
Query: 343 -WLPKSIG 363
W P +G
Sbjct: 331 EWRPSELG 338
>SB_22527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 283 VNCPIDAVDHTDVYGAIFVSEPSSSLPRSTLRGSCGDPISDPEEED 146
VN P+DA D G VS + P+S + D I D EE+D
Sbjct: 681 VNTPMDANTKKDNSGIELVSLYTGDKPQSERGAAENDGIEDEEEDD 726
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 241 GAIFVSEPSSSLPRSTLRGSCGDPISDPEEEDTC 140
G +EP + L ++ L+ DPISDPE + C
Sbjct: 1665 GVKMTNEPPTGLRQNLLQSYITDPISDPEFFNGC 1698
>SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)
Length = 144
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 386 ILCGNAGAPMLFGNHGVCAGMMRCSHQV 303
+ C N G PM + G A ++ C +QV
Sbjct: 77 VRCENVGCPMRIAHRGQAAQILECQYQV 104
>SB_290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +2
Query: 347 YRRASEPRRY----RTECWQSVTYQQTL 418
YRRA++P R CW SV Y+QTL
Sbjct: 105 YRRANDPADNVLCARQGCWSSVMYRQTL 132
>SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 337 TPWLPKSIGAPALPHRMLAICDISA 411
TP P SIG A R+ ICDI A
Sbjct: 122 TPTAPASIGGDAQSFRLQKICDIQA 146
>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 227 YKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
Y +R R V C+ W+ P+LL N H P G
Sbjct: 236 YDERWSRHRTVTCLDWSNQYPELLVASYNNNEDAPHEPDG 275
>SB_5065| Best HMM Match : Histone (HMM E-Value=2.6e-33)
Length = 330
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 333 TYPVVTEEHRSPGVTAQNAGNL*HIS 410
TYPV + ++ P TAQ GN HIS
Sbjct: 180 TYPVTSNQNDDPEATAQGVGN--HIS 203
>SB_44210| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=2.3)
Length = 368
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 595 LYPYAEDIMKSDATKPLEEHKFLLRCLWVY 684
LY A D + PLE+ +FL RC++V+
Sbjct: 262 LYSSATDALAKLKWLPLEKRRFLRRCVYVF 291
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 511 LNSSYPCFCQRHTNRRACRL*CTHS 437
L+ +Y FC+RH RAC + C+++
Sbjct: 57 LDLTYEVFCERHYYGRACDVYCSYT 81
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 333 TYPVVTEEHRSPGVTAQNAGNL*HIS 410
TYPV + ++ P TAQ GN HIS
Sbjct: 180 TYPVTSNQNDDPEATAQGVGN--HIS 203
>SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25)
Length = 472
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 310 CEHLIMPAHTPWLPKSIGAPALPHRMLAI 396
CE L+M A TPW KS A R+ A+
Sbjct: 13 CEILVMDARTPWSFKSARAALWKERVRAV 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,239,082
Number of Sequences: 59808
Number of extensions: 519081
Number of successful extensions: 1933
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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