Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40005
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.23 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.71 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.94 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.8  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 251 RVVNCIYWAVDSPKLLTIPDANTSSCRHI 337
           R   C +W    PKL  IPD   ++C+ I
Sbjct: 570 RTTYCAFWNEFLPKLKGIPDPXPNTCKVI 598


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 186  PRKVERGKEDDGSDTKIAPYT 248
            P   +RG+ DDGSD   +P T
Sbjct: 1379 PSPSDRGRNDDGSDRLTSPPT 1399


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 299 TIPDANTSSCRHIPRGYRR 355
           T+PD   S+CR IP  + R
Sbjct: 633 TVPDETHSACRDIPEEFLR 651


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 555 KLACYRWNTQVL 520
           KL  Y+WN Q+L
Sbjct: 90  KLKIYKWNNQIL 101


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 555 KLACYRWNTQVL 520
           KL  Y+WN Q+L
Sbjct: 73  KLKIYKWNNQIL 84


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 292 FRTVNCPID 266
           +RT++CPID
Sbjct: 155 YRTISCPID 163


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 292 FRTVNCPID 266
           +RT++CPID
Sbjct: 155 YRTISCPID 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,834
Number of Sequences: 438
Number of extensions: 4403
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)