Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DJM6 Cluster: Putative uncharacterized protein; n=1; ...    34   0.036
UniRef50_O16625 Cluster: Signal element on autosome protein 2; n...    36   0.70 
UniRef50_A5E7V5 Cluster: Predicted protein; n=1; Lodderomyces el...    35   2.1  
UniRef50_Q15654 Cluster: Thyroid receptor-interacting protein 6;...    33   6.5  
UniRef50_Q5HBD1 Cluster: Putative uncharacterized protein Erum39...    33   8.6  
UniRef50_Q5AUG8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  
UniRef50_Q5UQT4 Cluster: Uncharacterized protein R346; n=1; Acan...    33   8.6  

>UniRef50_A5DJM6 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 608

 Score = 34.3 bits (75), Expect(2) = 0.036
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 252 SKFPWADDINPSVYQAG-TDSSISENAYQLPQYYVGGRNDDPPSPVYQ 392
           SK  + DDI P +Y+A   D S SENA   P Y    R+   P PVY+
Sbjct: 210 SKQQYVDDIEPLLYEANFEDPSPSENA--SPSYQYNHRSLRSPEPVYK 255



 Score = 25.4 bits (53), Expect(2) = 0.036
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 372 PPSPVYQSPYGGGTWRSYSKAQKVHMQDAYCFPQCSSAFSLPLY 503
           PPSP   S  G   W+S  + Q      +Y  P  +S FS P++
Sbjct: 286 PPSPPTLSN-GSPDWQSSPEPQSPSPSRSYMAPGGNSLFSSPVH 328


>UniRef50_O16625 Cluster: Signal element on autosome protein 2; n=1;
           Caenorhabditis elegans|Rep: Signal element on autosome
           protein 2 - Caenorhabditis elegans
          Length = 1758

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 375 PSPVYQSPYGGGTWRSYSKA--QKVHMQDAYCFPQCSSAFSLPLYN--PNPMFH 524
           PSP +Q+PYGGG+  S S +         A   P+ S  F+ P+    PNP  H
Sbjct: 611 PSPQFQAPYGGGSLPSISASWLHSASTSAAAAAPERSEMFTSPIVTSAPNPYIH 664


>UniRef50_A5E7V5 Cluster: Predicted protein; n=1; Lodderomyces
           elongisporus NRRL YB-4239|Rep: Predicted protein -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 421

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 276 INPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSP 398
           +N   YQA   + I+ N+  +PQY     N  PP+P +  P
Sbjct: 113 VNTQQYQAAQQARINANSPTVPQYLPSKVNQSPPTPYFPQP 153


>UniRef50_Q15654 Cluster: Thyroid receptor-interacting protein 6;
           n=16; Mammalia|Rep: Thyroid receptor-interacting protein
           6 - Homo sapiens (Human)
          Length = 476

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>UniRef50_Q5HBD1 Cluster: Putative uncharacterized protein Erum3980;
            n=3; Ehrlichia ruminantium|Rep: Putative uncharacterized
            protein Erum3980 - Ehrlichia ruminantium (strain
            Welgevonden)
          Length = 3002

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 91   FSSCLFVENHVNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPRSNQQILSAAEQRASFHGL 270
            F   L ++NHVNK ++    ++  HQ+  RN  +  + V  +SN + L    +   F  L
Sbjct: 888  FQDLLDIQNHVNKSKSKTRIQILNHQIDGRN--NLLSYVCKKSNVEFLELLLKCCEFQEL 945


>UniRef50_Q5AUG8 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 327

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 312 SISENAYQLPQYYVGGRNDDPPSPVYQSP 398
           S + N YQ PQ Y GG    PP P YQ P
Sbjct: 51  SQTSNGYQYPQEYYGG-YQQPPPPYYQHP 78


>UniRef50_Q5UQT4 Cluster: Uncharacterized protein R346; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: Uncharacterized
           protein R346 - Mimivirus
          Length = 195

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 321 ENAYQLPQYYV----GGRNDDPPSPVYQSPYGGGTWRSYSKAQKVHMQDAYCFPQCSS 482
           +N    PQYY           PP+P+  S Y GG   SYS  +    Q AY  P C+S
Sbjct: 15  QNQAPQPQYYTRQPPSAGAHYPPNPLTPSQYVGGP--SYSAGRPYQSQHAYAQPGCTS 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,660,901
Number of Sequences: 1657284
Number of extensions: 14475442
Number of successful extensions: 37706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37692
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)