Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028985-1|AAH28985.1|  476|Homo sapiens thyroid hormone recepto...    33   0.95 
BC021540-1|AAH21540.1|  476|Homo sapiens thyroid hormone recepto...    33   0.95 
BC004999-1|AAH04999.1|  476|Homo sapiens thyroid hormone recepto...    33   0.95 
BC004249-1|AAH04249.1|  476|Homo sapiens thyroid hormone recepto...    33   0.95 
BC002680-1|AAH02680.1|  474|Homo sapiens thyroid hormone recepto...    33   0.95 
AF312032-5|AAK21007.1|  476|Homo sapiens thyroid receptor intera...    33   0.95 
AF093836-1|AAD03037.1|  476|Homo sapiens zyxin-related protein 1...    33   0.95 
AF000974-1|AAB62222.1|  476|Homo sapiens ZRP-1 protein.                33   0.95 
AJ001902-1|CAA05080.1|  476|Homo sapiens TRIP6 protein.                32   2.2  

>BC028985-1|AAH28985.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>BC021540-1|AAH21540.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>BC004999-1|AAH04999.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>BC004249-1|AAH04249.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>BC002680-1|AAH02680.1|  474|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 474

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 127 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 158


>AF312032-5|AAK21007.1|  476|Homo sapiens thyroid receptor
           interacting protein 6 protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>AF093836-1|AAD03037.1|  476|Homo sapiens zyxin-related protein 1
           protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>AF000974-1|AAB62222.1|  476|Homo sapiens ZRP-1 protein.
          Length = 476

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGSLKPNPASPLPASPYGGPTPASYTTA 160


>AJ001902-1|CAA05080.1|  476|Homo sapiens TRIP6 protein.
          Length = 476

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKA 434
           P Y  G    +P SP+  SPYGG T  SY+ A
Sbjct: 129 PAYRTGCLKPNPASPLPASPYGGPTPASYTTA 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,903,337
Number of Sequences: 237096
Number of extensions: 2305221
Number of successful extensions: 4528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4528
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)