Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    36   0.021
Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    28   7.2  
U49830-12|AAL16311.1|  363|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 375 PSPVYQSPYGGGTWRSYSKA--QKVHMQDAYCFPQCSSAFSLPLYN--PNPMFH 524
           PSP +Q+PYGGG+  S S +         A   P+ S  F+ P+    PNP  H
Sbjct: 611 PSPQFQAPYGGGSLPSISASWLHSASTSAAAAAPERSEMFTSPIVTSAPNPYIH 664


>Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical
           protein R01E6.5 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 291 YQAGTDS-SISENAYQ-LPQYYVGGRNDDPPSPVYQSPYGGGTWRSY 425
           Y  G DS S   + YQ  P+YY G ++   PS  + SPY G  +  Y
Sbjct: 194 YGQGHDSESYQPSYYQPKPKYYGGHQSHYQPSARHSSPYQGDQYYGY 240


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
 Frame = +1

Query: 115 NHVNKIQNSV-NFKMFKHQLSSRNVHSYQTTVVPRSNQQILSAAEQRASFHGLMI*THQC 291
           NH  K++N V N   FK   S +  H+    +  R  + I+  AE  A        T + 
Sbjct: 604 NHYVKMRNPVVNADAFK---SGKKAHNSAIPITVRQLEAIVRIAESIAKMELQQFATDKH 660

Query: 292 IRPALIVQYQKTHINYHSTMLVEGMMILHPLYTNPLMEEEHGGVTVKHKK-FICKTHIVS 468
           +  AL + ++ + I   +T  + G+      +T+   +E    + V+ KK F   TH+  
Sbjct: 661 VEEALRL-FRVSTIEAAATGNLAGV----EGFTSTADQEALNRIEVQMKKRFAIGTHVSE 715

Query: 469 HNVLQHF 489
           H ++Q F
Sbjct: 716 HLIVQDF 722


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical protein
            F26C11.3 protein.
          Length = 1317

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 372  PPSPVYQSPYGGGTWRSYSKAQKVHMQDAYCFPQCSSAFSLPLYNPN 512
            PP+  Y  P GG T R+    + +  +    +  C++     +YNP+
Sbjct: 936  PPTTTYNWPTGGTT-RTLPSGEIILSESLIAYKNCTTVLMQLIYNPS 981


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 89  LCYFGHE*LIIQSFEYILYLCVHHIYANL 3
           LC+FGH  L   S+  +L+L +H +++ L
Sbjct: 79  LCHFGHPFLCYASWSALLHLFIHSMWSLL 107


>U49830-12|AAL16311.1|  363|Caenorhabditis elegans Hypothetical
           protein C33F10.13 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +1

Query: 382 LYTNPLMEEEHGGVTVKHKKFICKTHIVSHNVL-QHFHCHY 501
           +Y N  MEE  GG+ +K     C T    HN    HF   Y
Sbjct: 316 VYGNSKMEEVRGGMDIKRLDGTCATLTFDHNTPGDHFERVY 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,947
Number of Sequences: 27780
Number of extensions: 366483
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)