Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.8  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        21   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 DDINPSVYQAGTDSSISENAYQLPQY 347
           DD NP++ +  +DS+      ++P Y
Sbjct: 862 DDFNPNIEEEASDSAQGRAILKIPSY 887


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 504 CIMAMKMLKNIVGNNMRLAYELFVLYCNSAMFLLHKGI 391
           CI  + ML +IVG  + +A EL   + +S++ +   GI
Sbjct: 744 CITEVMMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGI 781


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 504 CIMAMKMLKNIVGNNMRLAYELFVLYCNSAMFLLHKGI 391
           CI  + ML +IVG  + +A EL   + +S++ +   GI
Sbjct: 782 CITEVMMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGI 819


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -2

Query: 476 TLWETICVLHMNF 438
           ++W T+CVL+++F
Sbjct: 326 SIWITVCVLNVHF 338


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 414 MFLLHKGIGIQGMEDHHSFHQHSTVVIDMRFLILNYQ 304
           MF +H+G  I G    H       +  D+  +  NY+
Sbjct: 21  MFYVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSNYR 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,065
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)