Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40002
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   7.5  
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr...    27   9.9  
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr...    27   9.9  

>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 231 TNRTQHEYNIRVFNESLLEQIL-LKISDIYNIRVIWD 338
           T++   E N+    ES+ +QI   K+ DI  +RV+WD
Sbjct: 261 TSKVTEESNVDEVIESVKQQIKDAKLPDIEVVRVVWD 297


>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 464 KGCTIARNMGASKRALKDVLHILYEYLKTFEVSDYIRA-YEIFIACSSNTKKQFIMELTE 640
           +G   AR+  +SKR+   ++H L E  +  ++++ ++A  E+   C+   +   + ++ E
Sbjct: 262 QGTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIE 321

Query: 641 FI 646
           ++
Sbjct: 322 YV 323


>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 413

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 464 KGCTIARNMGASKRALKDVLHILYEYLKTFEVSDYIRA-YEIFIACSSNTKKQFIMELTE 640
           +G   AR+  +SKR+   ++H L E  +  ++++ ++A  E+   C+   +   + ++ E
Sbjct: 262 QGTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIE 321

Query: 641 FI 646
           ++
Sbjct: 322 YV 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,480,768
Number of Sequences: 28952
Number of extensions: 203715
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)