Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31056
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 32 0.11
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 31 0.25
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 31 0.25
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 1.8
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 4.0
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 26 7.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 9.4
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 9.4
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 415 DGRSRSSTDKYPRIAAKVPGSLSANRIRRPPKNRRSPV--VAYIHAEPGEALDAQDQ*SA 588
D S S D P+ K PGSLS +R RR + P Y +P + D ++
Sbjct: 132 DLNSNSEHDLLPKSVNKTPGSLSISRRRRIGRIGLGPPKRAEYTLTDPSKTSDTKN---- 187
Query: 589 TSLATDEEVERRAR 630
S DE++E ++R
Sbjct: 188 -STEADEDIEMKSR 200
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 400 SFRKIDGRSRSSTDKYPRIAAKVPG-SLSANRIRRPPKNRRSPVVAYIHAEPGEALD 567
S ++ ++ SS P A ++ G S S N + PPK +SP+ + A+ + +D
Sbjct: 448 SLAEVANQNSSSAPSVPVSAPRLSGKSASRNHVPSPPKGTKSPMASSEQAQHQQVID 504
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 563 RASPGSAWIYATTGLRRFFGGLLIRFADKLPGTFAAIRGYLSVLLRDRPSIFRKLQRR 390
R +P ++ + G+ GL++ A L I+ YLS+ +RD + K QR+
Sbjct: 3534 RLTPPIQYLISDLGVEGLLSGLVMSIAQSLSSPTTDIKQYLSLYVRDEVFWWSKQQRK 3591
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 650 YFIKTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRLHE 763
++ K + FE KV+D+ W+++S S++ K + L++
Sbjct: 1225 FYKKNISEFEREKVEDVAHWAQSSLSEMAKCFHAELYK 1262
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 88 VQLKMGPQFQNLPM--RDGVDWQINKTAYLWKDESNFLLSTKFLDWFK 225
+ L +F P+ + VD++I T YL+ + L FLDW +
Sbjct: 317 ITLSSSIEFTEFPLGFNENVDFEILGTVYLFLRTPSILNRLNFLDWHR 364
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 503 RQKTDEVRSWRISMQNQERLLMHKTNNLRPALRLMKKLRDAQGM 634
RQK DEV S+ Q+ ++L N KK++D + +
Sbjct: 657 RQKLDEVVSYWTDFQSNSKVLEENLNTTDVEFHSSKKIKDYEDL 700
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 473 PGTFAAIRGYLSVLLRDRPSIFRKLQRRHQ 384
PG I G + LRD PS+ +KL R+HQ
Sbjct: 106 PGVPCLIVG-TQIDLRDDPSVQQKLARQHQ 134
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 565 QEPLLVLHGYTPRPDFVGFLAASLFGLPT 479
Q P+ + + YTP PD++ ++F L T
Sbjct: 272 QYPVQIHYTYTPEPDYLDACLRTIFQLHT 300
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 589 TSLATDEEVERRARHERDRQLLHQNIVSV*NSQS*RHHVLEQEQS 723
T+L +D E RR HE Q L + I + N R H LE + S
Sbjct: 381 TTLESDREQLRR--HEEHSQKLLKFIEEIRNDYEERIHALESQNS 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,333
Number of Sequences: 5004
Number of extensions: 79824
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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