Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31056
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1259 - 35810926-35811777 34 0.15
04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570 30 1.8
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 30 1.8
07_03_1464 + 26726527-26727552 29 4.2
05_01_0213 - 1606383-1606816,1607695-1608355 29 5.6
04_04_1383 - 33144047-33144603,33145554-33147129 29 5.6
08_02_0676 - 19943638-19943895,19944296-19944632,19944711-19945063 28 7.4
04_01_0295 + 3926329-3926958 28 7.4
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 28 9.7
02_01_0544 - 3992381-3992500,3992718-3992757,3993121-3993203,399... 28 9.7
>01_06_1259 - 35810926-35811777
Length = 283
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 418 GRSRSSTDKYPRIAAKVPGSLSANRIRRPPKNR 516
GR R YPR A +P + R RPPKNR
Sbjct: 198 GRPRKDATMYPRKDATIPANTQPKRRGRPPKNR 230
>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
Length = 440
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 490 RIRRPPKNRRSPVVAYIHAEPGEALDAQDQ*SATSLATDEEVERRA-RHERD 642
R+ P R+ V AE GEAL + S T L TD+E+ RR +H+ D
Sbjct: 253 RLFLPFSRTRAAAVRVAPAEEGEALASLVTASITVLETDQELNRRMNKHKLD 304
>01_05_0799 +
25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 604 DEEVERRARHERDRQLLHQNIVSV*NSQS*RHHVLEQEQSFETV 735
+EE R+ R R R+ NIVS NS+S H+V ++ TV
Sbjct: 146 NEERNRKQREYRARKKAESNIVSGSNSESTNHNVSPYGTTYSTV 189
>07_03_1464 + 26726527-26727552
Length = 341
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -1
Query: 635 SC-LARLSTSSSVARLVADYWSCASRASPGSAWIYATTG---LRRFFGG 501
SC LA S ++ VA W+ AS ASP S+ G ++ FFGG
Sbjct: 164 SCFLAGDSAGGNMVHHVAQRWAAASAASPSSSTTLRLAGAVLIQPFFGG 212
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 69 TQTCRLCSTEN-GPSVPKPTDEGRSRLADQQNRLSVERRIQ 188
T T CS+E GPS P PT E RLA+ N+ S R++Q
Sbjct: 200 TTTTSSCSSEEVGPSSPSPTSE-EIRLAN--NQQSSRRKLQ 237
>04_04_1383 - 33144047-33144603,33145554-33147129
Length = 710
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 430 FVIGHRFSGNFSAGTKSTLKLNPFDLF-VMISVSAGPD*EWAMTYLTPLTL 281
F+ G+RFSG F A S +L DL +S + P E A +LT L L
Sbjct: 169 FLAGNRFSGPFPASVASLRRLRSIDLAGNRLSGALPPGIEVAFPHLTFLRL 219
>08_02_0676 - 19943638-19943895,19944296-19944632,19944711-19945063
Length = 315
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 544 HGYTPRPDFVGFLAASLFGLPTSCQVP 464
H P PD V F+A LF + T+ +VP
Sbjct: 212 HTIPPEPDTVAFMAGELFTVVTNGRVP 238
>04_01_0295 + 3926329-3926958
Length = 209
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 NRNESDIKFEPR--HAGYVQLKMGPQFQNL 123
N E +F+PR H V++K GP QN+
Sbjct: 142 NGKEEKFEFQPRTKHCSMVRIKYGPNLQNI 171
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 420 PITKQYRQIPPNCRKGTWQLVGKPNKEA 503
P Y +I PN G +Q GK N+EA
Sbjct: 688 PHPNSYNRIQPNTWSGAYQCWGKENREA 715
>02_01_0544 -
3992381-3992500,3992718-3992757,3993121-3993203,
3993322-3993552,3993661-3993705,3993958-3994079,
3994408-3994564,3994713-3994778,3994872-3994994
Length = 328
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 644 RSRSCLARLSTSSSVARLVADYWSCASRASPGSAWIYATT 525
R RS + R + +L+A S A RAS G+AW+YA T
Sbjct: 20 RGRSAVTRCFAKYPL-KLIAP--SKAGRASSGAAWLYAIT 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,289,509
Number of Sequences: 37544
Number of extensions: 538443
Number of successful extensions: 1592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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