Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31056
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.46 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 447  PPNCRKGTWQLVGKPNKEAAK--KPTKSGRGVYPCR 548
            P N ++G  Q   KP  + A   KP   G+G  P R
Sbjct: 1002 PANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKR 1037


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 597 KAGRRLLVLCIKSLSWFCMDIRHDRTSSVFWRPP 496
           + G  + VL I SLS   MD   D     FW  P
Sbjct: 37  EVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 70


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 696 SSTLTISNRNNVLMK 652
           S T+ I+NRNN  MK
Sbjct: 484 SYTIVINNRNNTSMK 498



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 756 RRDTINLNSFEGLFLLQNVMSSTLTISNRN 667
           R + I L    G+ +L N+M +++   N+N
Sbjct: 330 RGERIQLTEKNGIDVLGNIMEASILSPNQN 359


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 637 VHALRVSQLLHQSQGWSQIIGLVHQEP 557
           V  LR+S+L+     W ++   ++Q+P
Sbjct: 217 VRLLRLSRLVRYVSQWEEVYIPLYQQP 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,902
Number of Sequences: 438
Number of extensions: 5986
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)