Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31056
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53180.1 68416.m05860 glutamine synthetase, putative similar ...    30   1.5  
At5g67150.1 68418.m08465 transferase family protein similar to a...    29   3.5  
At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00...    29   3.5  
At3g45690.1 68416.m04938 proton-dependent oligopeptide transport...    29   4.6  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    29   4.6  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    28   8.1  
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794...    28   8.1  

>At3g53180.1 68416.m05860 glutamine synthetase, putative similar to
           glutamine synthetase (glutamate--ammonia ligase)
           [Bacillus subtilis] SWISS-PROT:P12425
          Length = 845

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 420 PITKQYRQIPPNCRKGTWQLVGKPNKEAA 506
           P+   Y +I PN   G +Q  GK N+EAA
Sbjct: 696 PLPNSYDRIQPNTWSGAFQCWGKENREAA 724


>At5g67150.1 68418.m08465 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 673 QKQCFDEVTGDRVHALRVSQLLHQSQGWSQI 581
           +K+CF  V G       V+++LH   GW+ +
Sbjct: 308 EKECFGNVVGFATVTTTVAEMLHNGLGWAAL 338


>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 566

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 455 LPQRYLAACRQTE*GGRQKTDEVRSWRISMQNQERLLMHKTNNL 586
           +P++  ++C + E G  +K  E+  W ++  +++ LL   TN++
Sbjct: 184 VPRQEKSSCNEIERGASRKEGEIPFWMLAFSDRKHLLNIVTNHV 227


>At3g45690.1 68416.m04938 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 516

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 624 ASLNFFISRKAGRRLLVLCIKSLSWFCMDIRHDRTSSVFW 505
           AS+   IS      L+ L  K+  W   DI H R  +V+W
Sbjct: 439 ASVVIGISFYLSTALITLIQKTTKWLPNDINHGRVDNVYW 478


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 314 FSVRSCGDADHYE*IERI*LKRGLGAGAEVSGKSMADHEAVPTNTP 451
           FS  +    DH+    R    RG G GA  S  S   H + P N+P
Sbjct: 99  FSPPNADKRDHFRYDGRRNRSRGRGTGAAGSSSSQLQHNSGPFNSP 144


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 630 PCASLNFFISRKAGRRLLVLCIKSLSWFCMDIRHD 526
           P +S+NF +S     R   LC+K L+ F   IR +
Sbjct: 33  PSSSINFIVSSCRVTRYQTLCVKCLAAFADKIRRN 67


>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
           Domain of Unknown function
          Length = 350

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 400 FSAGTKSTLKLNPFDLFV 347
           FS+ TKST +++PFDL V
Sbjct: 5   FSSSTKSTAEISPFDLVV 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,951
Number of Sequences: 28952
Number of extensions: 431860
Number of successful extensions: 1259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)