Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31055
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    36   0.006
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    29   0.90 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    28   1.6  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.8  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   6.3  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   8.4  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +1

Query: 520 DDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 699
           +D Y+Y + E E+E ++K FSSV    Q E LS   +  LI+E L  +AKF   + R  +
Sbjct: 410 NDLYWYLVVEIEDEPVSKLFSSVMFLFQKE-LSKSVEGRLIRETLSAQAKFVEKLLRISK 468

Query: 700 S 702
           S
Sbjct: 469 S 469


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 511 VDSDDNYFYALPEDEEEYLT--KEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 684
           VDSDDN   +  ++EEE  T  KE       +Q E +  MT  EL  + +L     + L 
Sbjct: 546 VDSDDNIELSDSDEEEEKATARKESDEKGSSSQKELVDRMT--ELASQSILTPNDLKKLE 603

Query: 685 KRTERSKMQRM 717
           +  E++ + R+
Sbjct: 604 ELREQAGVDRL 614


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 428 MEIHKPEPENAFNILQTPSARTRDSS 505
           +E +  E +NAFNILQT S   RD +
Sbjct: 3   LEENVKEAKNAFNILQTLSVEDRDDA 28


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 723 FLHSLHLRALSPFYKVFK 670
           F+HSLH  +L P++K  K
Sbjct: 791 FIHSLHQSSLLPYFKTLK 808


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 532 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKN 633
           FY + E+ E++ T E   +YE     RLS+ +++
Sbjct: 363 FYQMYENIEKFFTTENGGLYESIVSGRLSHFSRS 396


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 74  NQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWRTDAITS 205
           N  T R   + ++N + G+    +F +G G  YH     D  T+
Sbjct: 272 NTATRRALMNGVLNGRNGLGSIFVFASGNGGHYHDNCNFDGYTN 315


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 177 EDGEPTQSPVVGAPSIVEKQKPASVDETSKRKGDARIPN 293
           +DGE  +   + A + VEK+ P  +D  S++   + IPN
Sbjct: 216 QDGEIIRR--LNAETTVEKELPKPIDLVSEKLATSNIPN 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,292
Number of Sequences: 5004
Number of extensions: 56903
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)