Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31055
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769...    32   0.41 
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386     30   2.2  
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900...    30   2.2  
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066...    29   5.0  
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780...    29   5.0  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    28   6.6  

>01_05_0199 -
           19174971-19175105,19176302-19176628,19176813-19176915,
           19178852-19178916,19179941-19180048,19180213-19180305,
           19180395-19180442,19180801-19180899,19180980-19181096,
           19181186-19181239,19181312-19181404,19181776-19181881,
           19182050-19182084,19182173-19182259,19182385-19182462,
           19182528-19182596,19182682-19182780,19183644-19183685,
           19184498-19184570,19184654-19184982,19185070-19185127,
           19185217-19185269,19186075-19186144,19186276-19186337,
           19186452-19186540,19186906-19187011,19187110-19187178,
           19187295-19187330
          Length = 900

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 514 DSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRT 693
           D  ++Y   L +       K    + +D +C RL  + + E+ QEY+    K E   KR 
Sbjct: 475 DLFESYLMELQKKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRI 534

Query: 694 ERSKMQRME 720
            + +++R E
Sbjct: 535 HKEQVRRQE 543


>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
          Length = 837

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 313 KRRHNFTFGIRASPFLFDVSSTLA-GFCFSTMDG--APTTGDCVGSPSSMIRLSASIR 149
           +R   +  G      LF+  +  A G+C S  DG   PT G C G     I+LS  +R
Sbjct: 135 QRNTFYIIGCNIDVTLFEYGTRDAVGYCVSRCDGEKVPTEGPCNGKGCCSIKLSRDLR 192


>01_01_1135 -
           9003823-9004182,9004308-9004367,9004441-9004683,
           9005207-9005305,9005807-9005986,9006090-9006164
          Length = 338

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 509 QNWNHECVLKASEVY*THFRVQVCEFPSKIDYC*TGHEFSSKQFYESDY 363
           +NWN   V KAS++  +  + +V   P KI++    HE  + + Y +DY
Sbjct: 57  RNWN---VQKASKMMKSAVKWRVSYMPQKINWDDVAHEAETGKIYRADY 102


>06_03_0608 +
           22705321-22705652,22705809-22706178,22706264-22706656,
           22707183-22707204,22707257-22707928,22708019-22708494
          Length = 754

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 532 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMQ 711
           F   P    + L   FS +  DA  +  + M++N +I E++  E + +NLV   E  +  
Sbjct: 242 FRKKPLQNVDDLNIMFSDIINDAS-DHWNPMSENPIIPEHMTEEVQEDNLVVDDEEVQET 300

Query: 712 RMEE 723
            MEE
Sbjct: 301 PMEE 304


>05_07_0352 -
           29475855-29476330,29476421-29477165,29477689-29478081,
           29478167-29478473,29478694-29479019
          Length = 748

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 532 FYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMQ 711
           F   P    + L   FS +  DA  +  + M++N +I E++  E + +NLV   E  +  
Sbjct: 219 FRKKPLQNVDDLNIMFSDIINDAS-DHWNPMSENPIIPEHMTEEVQEDNLVVDDEEVQET 277

Query: 712 RMEE 723
            MEE
Sbjct: 278 PMEE 281


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 511 VDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC--ERLSNMTKNELIQEYLLLEAKFENLV 684
           +DSD ++   +P+D EE L    S   E + C  +R S M + E + E  L+E   E++ 
Sbjct: 488 LDSDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGM-EIEDVPEPDLIEKFKEDVE 546

Query: 685 KRTE 696
           K TE
Sbjct: 547 KLTE 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,497,793
Number of Sequences: 37544
Number of extensions: 307059
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)