Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31055
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37323| Best HMM Match : RTBV_P12 (HMM E-Value=2.3) 44 2e-04
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18) 30 1.7
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 29 3.9
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 28 6.7
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_37323| Best HMM Match : RTBV_P12 (HMM E-Value=2.3)
Length = 225
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +1
Query: 553 EEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKR 690
+E Y K+F+ VY+ E L ++K ELI +Y+ LE K ENL+++
Sbjct: 107 DELYFEKDFNDVYDSIHAETLLGLSKQELIYKYMELEKKEENLLRQ 152
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 44 VGSTEVFGHINQCTIRIDCSSIINRKEGIIDQLLFPNGRG*SYHRRWR 187
+G E+ IN C DC S + EG I+ +P G S WR
Sbjct: 888 LGDAEIQNLINMCNYSQDCGSTLRASEGTINSPNWPQGYKGSKTCTWR 935
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.5 bits (68), Expect = 0.72
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 499 FQFCVDSDDNYFYALPEDEEEY--LTKEFSSVYEDAQCERLS--NMTKNELIQEYLLLEA 666
F++ V S E E+Y L K+ + E ++ + + EL+QE L++
Sbjct: 460 FKYVVISHSKVRVRETELSEKYHELEKQLRVISEKSENTKTEYDKSKEKELLQEMLVVVE 519
Query: 667 KFENLVKRTERSKMQRMEEDK 729
K E L+ + SK + M+EDK
Sbjct: 520 KREQLIAEMDESKHRYMDEDK 540
>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 530
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 327 GVIGGETKNLKEIIAFVKLF*RKLMP-RSTIINF*WKFTNLNPKMRSIYFRRLQHALVIP 503
G +G +TKN + R L+ +S I+ W+ ++ K R I++ +L HAL P
Sbjct: 467 GSLGVDTKNRIHYMKLAHALKRPLISMKSEYISADWETCGVDTKNR-IHYMKLAHALKRP 525
Query: 504 VLC 512
++C
Sbjct: 526 LIC 528
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 553 EEEYLTKEFSSVYEDAQCERLSN-MTKNELIQEYLLLEAKFENLVKRTERSKMQRMEED 726
++E +E + + +D Q S + KNE I + +LE K L K +R Q+ E+D
Sbjct: 201 KKENSLEEMTELLKDTQTRLQSEKLVKNEYIIKCEILEGKLAMLEKDDDRDSAQQEEKD 259
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 505 FCVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 684
F +D ++ F +PED E+ SS+Y + N ++ E + + +E+ EN+
Sbjct: 500 FNIDKVESVFEKMPEDIEDENESTLSSMYGQIRVSLKINNSQVESDRVNVFIESVLENIF 559
Query: 685 KR-TERSKMQRMEEDK 729
+ T ++ M+ DK
Sbjct: 560 RMFTIQNLYNSMKIDK 575
>SB_5481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 571 KEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMQR 714
+E S+ E+ + +R K +QE +L + F+NLV+R S+ Q+
Sbjct: 152 QECQSLEEEKKDKRDRIKQKTAQLQELILQQIAFKNLVQRNRSSEKQQ 199
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +1
Query: 451 RKCVQYTSDAFSTHS*FQFCVDSDDNYFYALPEDE-EEYLTK--EFSSVYEDAQCERLSN 621
RK ++ T + Q + D + L E EEY K F + E + ERL
Sbjct: 681 RKAIEEHEKLVETSARLQRMIPDKDAFINTLRESRTEEYQAKFQAFQAKLEQVRKERLEV 740
Query: 622 MTKNELIQEYLLLEAKFENLVKRTERSKMQRMEEDK 729
K + + + E KR + K ++ +E+K
Sbjct: 741 RRKRRIKDRKERKKIEMEEAKKREQEEKERKEKEEK 776
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 460 VQYTSDAFSTHS*FQFCVDSDDNYFYALPEDEEEYLTKEFSSVYEDA--QCERLSNMTKN 633
+Q SD F TH C D+D L EDE + +T ++ ++ D Q +R++ + +
Sbjct: 2815 LQAISDTFRTHE--GVCKDADARNDLPLIEDEVQSMTDQYEALRRDVGRQLDRVAEV-QE 2871
Query: 634 EL--IQEYLL 657
EL QE LL
Sbjct: 2872 ELAGYQEALL 2881
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,774,000
Number of Sequences: 59808
Number of extensions: 378313
Number of successful extensions: 945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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