Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31055
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 535  YALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNE--LIQEYLLLEAKFENLVKRTERSKM 708
            YA  +   E L ++          ER+    +NE  + QE + LEA+    ++R E  ++
Sbjct: 2619 YAAEQQRLELLRRQEEERLRKEAEERMRIQRENEERVRQEQMRLEAEERERIRRAEEERI 2678

Query: 709  QRMEEDK 729
            Q+  EDK
Sbjct: 2679 QKELEDK 2685


>AL117202-7|CAB55070.1|  302|Caenorhabditis elegans Hypothetical
           protein Y47D3A.10 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 193 RNHQWSGRHPSLKNRNRLALTKRQKEKET 279
           +N QW+   PS KN    A+T+ +  KET
Sbjct: 63  QNQQWTPFAPSTKNSKLSAITETEHRKET 91


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
            protein M116.5 protein.
          Length = 1064

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 165  NLIIEDGEPTQSPVVGAPSIVEKQKPASVDETSKRKGDARIPNV 296
            N I+E   P+QS    +P + ++QK  S+  + K KG    P V
Sbjct: 1015 NSIVEPSSPSQSESRASPEVADRQKRISL--SLKEKGKRYSPQV 1056


>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 529 YFYALPEDEEEYLTKEFSSVYE 594
           YF+A+ E   EYL+KE S  YE
Sbjct: 158 YFFAMDEFSMEYLSKEISLRYE 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,582
Number of Sequences: 27780
Number of extensions: 314288
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)