Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31055
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 668 FASNRRYSCISSFFVIFDRRSHCASSY 588
           FAS R YS  S   V   R S C  +Y
Sbjct: 429 FASGRYYSAYSLHHVRSSRESSCEQTY 455


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 259 VSSTLAGFCFSTMDGAPTTG 200
           +S+T+AG  +  + G P+TG
Sbjct: 836 MSTTMAGVIYPPVIGTPSTG 855


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 463 QYTSDAFSTHS*FQFCVDSDD 525
           +YT++ F T   F F  D +D
Sbjct: 196 RYTTEGFLTTCSFDFLTDDED 216


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 460 VQYTSDAFSTHS*FQFCVDSDDNYFYALPEDEEE 561
           +Q+     S+H  FQ  + S +NY+    E  EE
Sbjct: 529 MQFGDKLESSHDSFQAALRSIENYYSGKLERTEE 562


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 460 VQYTSDAFSTHS*FQFCVDSDDNYFYALPEDEEE 561
           +Q+     S+H  FQ  + S +NY+    E  EE
Sbjct: 567 MQFGDKLESSHDSFQAALRSIENYYSGKLERTEE 600


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 201 PVVGAPSIVEKQKPASVDETSKRK 272
           PV+   ++ ++Q P S  ET+ +K
Sbjct: 770 PVIKPANVNKEQSPNSTKETTPKK 793


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 463 QYTSDAFSTHS*FQFCVDSDD 525
           +YT++ F T   F F  D +D
Sbjct: 196 RYTTEGFLTTCSFDFLTDDED 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,489
Number of Sequences: 438
Number of extensions: 4247
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)