Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31054
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   100   2e-22
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   100   4e-22
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    31   0.13 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.5  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.5  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   3.6  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.6  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    27   3.6  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.7  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   8.2  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   8.2  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   8.2  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  100 bits (240), Expect = 2e-22
 Identities = 45/88 (51%), Positives = 67/88 (76%)
 Frame = +3

Query: 246 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 425
           F + +L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RVF I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140

Query: 426 GFTNKDSLSQRKTCYAQHTQVRAIRKKI 509
           GFT + +   +KT YAQ +Q+RAIR+K+
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKM 168



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 40/65 (61%), Positives = 50/65 (76%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 237
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 238 ERSFR 252
           E +FR
Sbjct: 78  EHAFR 82



 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 30/65 (46%), Positives = 48/65 (73%)
 Frame = +2

Query: 512 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 691
           ++I    ++  +RE+V KLIP+ I ++IE+A   I+PL++V +RKVK+LK P+ +  KL+
Sbjct: 170 QVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLL 229

Query: 692 ELHGE 706
           ELHGE
Sbjct: 230 ELHGE 234


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 44/88 (50%), Positives = 66/88 (75%)
 Frame = +3

Query: 246 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 425
           F + +L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+F I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140

Query: 426 GFTNKDSLSQRKTCYAQHTQVRAIRKKI 509
           GFT++     +KT YAQ +Q+RAI +K+
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKM 168



 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 42/65 (64%), Positives = 50/65 (76%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 237
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 238 ERSFR 252
           E SFR
Sbjct: 78  EHSFR 82



 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 31/65 (47%), Positives = 46/65 (70%)
 Frame = +2

Query: 512 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 691
           ++I        ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ +  KL+
Sbjct: 170 QVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLL 229

Query: 692 ELHGE 706
           ELHGE
Sbjct: 230 ELHGE 234


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 419  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENCEIITRDVTNSELREVVNKL 568
            LHW+    L+  +Q +  P H+GQ  S  + N E +   V   E   +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 692 PSTSRSRNGASSTLSPFGCKHRAE 621
           PSTSR RN   S LS    KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 512 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 643
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 264 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 395
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 359 LPFFNHPPELIGCEVHAVEVAEHITS 282
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 625 ARCLHPKGESVEEAPFRDLEVDGTSRRRRW 714
           +RCL    ++V+EA  RDLE++ ++    W
Sbjct: 22  SRCLGFAAQNVDEANLRDLEIEFSALSAFW 51


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 482 SGQSNQKENCEIITRDVTNSELRE 553
           +G  N +ENC++IT ++ N+  R+
Sbjct: 22  TGTPNARENCDMITNELRNAIQRQ 45


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 302 VAEHITSLHIFGD*SELRKD-LSASVSACRSARETSKTL 189
           +AE+I  +  FGD  ++  D +S  +S  RS  +T+  L
Sbjct: 199 IAEYINDIEAFGDIGQVNMDKISQIISKNRSLNDTTVKL 237


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 336 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 473
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 315 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 413
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,773
Number of Sequences: 5004
Number of extensions: 63373
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)