Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31053
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   108   9e-25
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   108   9e-25
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    84   2e-17
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    27   2.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   6.5  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  108 bits (259), Expect = 9e-25
 Identities = 48/85 (56%), Positives = 58/85 (68%)
 Frame = +2

Query: 455 PGNGMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 634
           P NG  +++      +  +F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGV
Sbjct: 8   PANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGV 67

Query: 635 LTNSRVRLLMSKGHSCYRPRRDGER 709
           L   RVRLL+  GH CYRPRRDGER
Sbjct: 68  LLPHRVRLLLRAGHPCYRPRRDGER 92



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           MKLN+SYPA G QKL E+ D+ +LR F
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVF 27


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  108 bits (259), Expect = 9e-25
 Identities = 48/85 (56%), Positives = 58/85 (68%)
 Frame = +2

Query: 455 PGNGMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 634
           P NG  +++      +  +F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGV
Sbjct: 8   PANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGV 67

Query: 635 LTNSRVRLLMSKGHSCYRPRRDGER 709
           L   RVRLL+  GH CYRPRRDGER
Sbjct: 68  LLPHRVRLLLRAGHPCYRPRRDGER 92



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           MKLN+SYPA G QKL E+ D+ +LR F
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVF 27


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 34/66 (51%), Positives = 50/66 (75%)
 Frame = -1

Query: 203 TATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESI 24
           T+ DVIHS  +PSLG+K D  P RLNQ +  I+R G+F+GQCSE+CG  HS +PIV++ +
Sbjct: 176 TSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGV 235

Query: 23  SIKNVI 6
           S+++ +
Sbjct: 236 SLEDFL 241



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 385 SVLLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLE 254
           S+ +K+IG Q +  YE +DF       + FDSY++P  +++    R LE
Sbjct: 110 SMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLE 158


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 581 VHSPSIHRLTDQPLLRRPCAFRKRSKLVLV 492
           +H+ S     D P ++ PC F+ RSKL ++
Sbjct: 140 IHARSFIPCQDTPSVKVPCTFKIRSKLPVI 169


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 464 GMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAG 595
           GM  VVR   +   +    +   A +E +Q   +WKGY L+  G
Sbjct: 388 GMACVVRVANQVNETRRIHENRNAIIELEQRVIDWKGYSLQYFG 431


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 504 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEK 397
           A   PP  T S IP  GT+ L   +   P NV   +
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDETR 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,683
Number of Sequences: 5004
Number of extensions: 60812
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)