BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV31053 (743 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 108 9e-25 SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 108 9e-25 SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 84 2e-17 SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 27 2.1 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.9 SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 26 6.5 >SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 108 bits (259), Expect = 9e-25 Identities = 48/85 (56%), Positives = 58/85 (68%) Frame = +2 Query: 455 PGNGMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 634 P NG +++ + +F EKRMG EV D +G E+ GYV ++ GGNDKQGFPM QGV Sbjct: 8 PANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGV 67 Query: 635 LTNSRVRLLMSKGHSCYRPRRDGER 709 L RVRLL+ GH CYRPRRDGER Sbjct: 68 LLPHRVRLLLRAGHPCYRPRRDGER 92 Score = 41.1 bits (92), Expect = 2e-04 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = +3 Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515 MKLN+SYPA G QKL E+ D+ +LR F Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVF 27 >SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 108 bits (259), Expect = 9e-25 Identities = 48/85 (56%), Positives = 58/85 (68%) Frame = +2 Query: 455 PGNGMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 634 P NG +++ + +F EKRMG EV D +G E+ GYV ++ GGNDKQGFPM QGV Sbjct: 8 PANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGV 67 Query: 635 LTNSRVRLLMSKGHSCYRPRRDGER 709 L RVRLL+ GH CYRPRRDGER Sbjct: 68 LLPHRVRLLLRAGHPCYRPRRDGER 92 Score = 41.1 bits (92), Expect = 2e-04 Identities = 17/27 (62%), Positives = 21/27 (77%) Frame = +3 Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515 MKLN+SYPA G QKL E+ D+ +LR F Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVF 27 >SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 248 Score = 83.8 bits (198), Expect = 2e-17 Identities = 34/66 (51%), Positives = 50/66 (75%) Frame = -1 Query: 203 TATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESI 24 T+ DVIHS +PSLG+K D P RLNQ + I+R G+F+GQCSE+CG HS +PIV++ + Sbjct: 176 TSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGV 235 Query: 23 SIKNVI 6 S+++ + Sbjct: 236 SLEDFL 241 Score = 35.1 bits (77), Expect = 0.011 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = -2 Query: 385 SVLLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLE 254 S+ +K+IG Q + YE +DF + FDSY++P +++ R LE Sbjct: 110 SMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLE 158 >SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces pombe|chr 3|||Manual Length = 612 Score = 27.5 bits (58), Expect = 2.1 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -1 Query: 581 VHSPSIHRLTDQPLLRRPCAFRKRSKLVLV 492 +H+ S D P ++ PC F+ RSKL ++ Sbjct: 140 IHARSFIPCQDTPSVKVPCTFKIRSKLPVI 169 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 26.2 bits (55), Expect = 4.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +2 Query: 464 GMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAG 595 GM VVR + + + A +E +Q +WKGY L+ G Sbjct: 388 GMACVVRVANQVNETRRIHENRNAIIELEQRVIDWKGYSLQYFG 431 >SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 445 Score = 25.8 bits (54), Expect = 6.5 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = -3 Query: 504 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEK 397 A PP T S IP GT+ L + P NV + Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDETR 402 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,957,683 Number of Sequences: 5004 Number of extensions: 60812 Number of successful extensions: 147 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 147 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 353266144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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