Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31053
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    94   9e-20
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    91   6e-19
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    31   0.97 
11_01_0125 + 1018059-1018403                                           29   3.9  
01_06_1584 - 38441654-38442847                                         29   3.9  
10_08_0703 - 20014414-20014920                                         28   6.8  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
 Frame = +2

Query: 512 FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 688
           FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G  C+R 
Sbjct: 27  FYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRG 86

Query: 689 -PRRDGER 709
             RRDGER
Sbjct: 87  YGRRDGER 94



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           MK N++ P TGCQK  E+ D+ KLR+F
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAF 27


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
 Frame = +2

Query: 512 FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 688
           F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R 
Sbjct: 27  FFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRG 86

Query: 689 -PRRDGER 709
             RRDGER
Sbjct: 87  YGRRDGER 94



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           MK N++ P TGCQK  E+ D+ KLR+F
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAF 27


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 401 SWLTFDGIDRSHEVKRFVPGNGMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYV 580
           SWL  D      +V RF+PG G   V  +    +A +    R  A + +D  G +W+ Y 
Sbjct: 322 SWLPAD------KVPRFLPGKGPEPVPEAATMRKARVSVRARSDAPMISD--GCQWRKYG 373

Query: 581 LRVAGGN 601
            ++A GN
Sbjct: 374 QKMAKGN 380


>11_01_0125 + 1018059-1018403
          Length = 114

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 565 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPLMLQTAPRWREKRKSVRGC 732
           +EG+    RWR+  AR      RP  +  S     G  + + + R R K +++RGC
Sbjct: 57  VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112


>01_06_1584 - 38441654-38442847
          Length = 397

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 187 ITSVAVIIIRIWLFIGKIIRLSTL 258
           +T + +I+I IW  +G+I+RLS L
Sbjct: 56  VTRIVLILITIWWGVGEIVRLSFL 79


>10_08_0703 - 20014414-20014920
          Length = 168

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 497 AQASIFYE-KRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 613
           + AS+F E +R  A   A Q G +W+G V   AGG +++G
Sbjct: 125 SHASVFLELRRRTARATAGQ-GRQWRGSVESEAGGVERRG 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,828
Number of Sequences: 37544
Number of extensions: 379279
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)