Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31053
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       111   8e-25
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       111   8e-25
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              110   1e-24
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        53   3e-07
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   39   0.005
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   5.3  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  111 bits (266), Expect = 8e-25
 Identities = 48/67 (71%), Positives = 57/67 (85%)
 Frame = -1

Query: 203 TATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESI 24
           TA DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE++
Sbjct: 165 TAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAV 224

Query: 23  SIKNVIN 3
           S+   IN
Sbjct: 225 SLDKYIN 231



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/46 (45%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
 Frame = -2

Query: 385 SVLLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLE 254
           ++ +K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLLE
Sbjct: 102 ALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLE 147


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  111 bits (266), Expect = 8e-25
 Identities = 48/67 (71%), Positives = 57/67 (85%)
 Frame = -1

Query: 203 TATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIESI 24
           TA DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE++
Sbjct: 165 TAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAV 224

Query: 23  SIKNVIN 3
           S+   IN
Sbjct: 225 SLDKYIN 231



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/46 (45%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
 Frame = -2

Query: 385 SVLLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLE 254
           ++ +K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLLE
Sbjct: 102 ALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLE 147


>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  110 bits (264), Expect = 1e-24
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +2

Query: 536 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGER 709
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GER
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGER 59



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
 Frame = +1

Query: 565 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGPLMLQTAPRWREKRK 717
           + G C    W+    RI    D+ G P KQ   ++        KG    +       KRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 718 SVRGCIVD 741
           SVRGCIVD
Sbjct: 63  SVRGCIVD 70


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/46 (45%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
 Frame = -2

Query: 385 SVLLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLE 254
           ++ +K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLLE
Sbjct: 102 ALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLE 147



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = -1

Query: 203 TATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIF 90
           TA DVIHS  +P+L VK+DA PGRLNQT FFI +   F
Sbjct: 165 TAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -2

Query: 676 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVKDRSLC 497
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++  S  
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIEAPSKS 311

Query: 496 S 494
           S
Sbjct: 312 S 312


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 542 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 625
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,886
Number of Sequences: 59808
Number of extensions: 466155
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)