Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31053
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   118   3e-27
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.      28   6.1  
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w...    28   6.1  
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c...    28   8.0  
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph...    28   8.0  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  118 bits (285), Expect = 3e-27
 Identities = 51/85 (60%), Positives = 62/85 (72%)
 Frame = +2

Query: 455 PGNGMPEVVRSGGRAQASIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 634
           P  G+ +        +  +F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+
Sbjct: 8   PATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGI 67

Query: 635 LTNSRVRLLMSKGHSCYRPRRDGER 709
           LTN RVRLL+ KG SCYR R++GER
Sbjct: 68  LTNGRVRLLLKKGQSCYRERKNGER 92



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           M+LN +YPATG QK FEV +E KLR F
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLF 27



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 667 KGPLMLQTAPRWREKRKSVRGCIVD 741
           KG    +       KRKSVRGCIVD
Sbjct: 79  KGQSCYRERKNGERKRKSVRGCIVD 103


>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -1

Query: 539 LRRPCAFRKRSKLVLVHHFEQLLASRCRVRNV*LHDCGQSRRTSAMKKTKCVSAAKI 369
           L++   +++ S+L +V   E LL +   +R++   D    + TS MKK K +SAA +
Sbjct: 13  LKKRVKYQETSRLQMVEIRETLLDNEKELRSL---DSTLKKTTSFMKKVKLLSAATV 66


>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 3 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -1

Query: 539 LRRPCAFRKRSKLVLVHHFEQLLASRCRVRNV*LHDCGQSRRTSAMKKTKCVSAAKI 369
           L++   +++ S+L +V   E LL +   +R++   D    + TS MKK K +SAA +
Sbjct: 13  LKKRVKYQETSRLQMVEIRETLLDNEKELRSL---DSTLKKTTSFMKKVKLLSAATV 66


>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division
           cycle related protein14, isoform b protein.
          Length = 1063

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 429 RSIPSNVSHEKDQMCQCC*NLSDINDTEDMNIQILIIL 316
           R +P  +SH   Q+C+    ++DI+   D N ++ I+L
Sbjct: 746 RKLPIKISHRLCQICRTIKPIADISMMTDENEKLFILL 783


>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14
           phosphatase isoform B protein.
          Length = 1063

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 429 RSIPSNVSHEKDQMCQCC*NLSDINDTEDMNIQILIIL 316
           R +P  +SH   Q+C+    ++DI+   D N ++ I+L
Sbjct: 746 RKLPIKISHRLCQICRTIKPIADISMMTDENEKLFILL 783


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,891
Number of Sequences: 27780
Number of extensions: 337921
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)