Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31053
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.25 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.25 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 678 EWPFDIRRRTRLFVRTPCFI 619
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 678 EWPFDIRRRTRLFVRTPCFI 619
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 526 ALFVKD-RSLCSSTTSNNFWHPVAGYETFN 440
           AL V D R+  S   +NN ++P   Y TFN
Sbjct: 207 ALLVYDFRNSRSWRITNNLFYPYPPYGTFN 236


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 524 RMGAEVEADQLGDEWKGYV 580
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 9   NVFD*NTFNYNRYKTMISSTNF 74
           N ++ N  NYN YK +  + N+
Sbjct: 102 NNYNYNNNNYNNYKKLYYNINY 123


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 736 QYIHELIYVSLSIAARSV 683
           QY+ E+ YV   +AAR+V
Sbjct: 749 QYLAEMNYVHRDLAARNV 766


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +2

Query: 389 IWSFSWLTFDGIDRSHEVKRFVPGN 463
           +W F W+ F  +    E+K     N
Sbjct: 1   MWHFLWIVFLALANGEEIKTIYSWN 25


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   INNVFD*NTFNYNRYKTMISSTNF 74
           I+N  + N  NYN YK +  + N+
Sbjct: 90  IHNNNNYNNNNYNNYKKLYYNINY 113


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 698 DGERNVNQFVDV 733
           DG+R V QFVDV
Sbjct: 531 DGQRLVYQFVDV 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,886
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)