Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31053
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    90   1e-18
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              89   3e-18
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si...    31   1.1  
At5g60310.1 68418.m07559 lectin protein kinase, putative similar...    28   7.5  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
 Frame = +2

Query: 512 FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 688
           FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R 
Sbjct: 27  FYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG 86

Query: 689 -PRRDGER 709
             RR GER
Sbjct: 87  HGRRTGER 94



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           MK NV+ P TGCQK  E+ D+ KLR+F
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAF 27


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
 Frame = +2

Query: 512 FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 688
           F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R 
Sbjct: 27  FFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG 86

Query: 689 -PRRDGER 709
             RR GER
Sbjct: 87  HGRRTGER 94



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +3

Query: 435 MKLNVSYPATGCQKLFEVVDEHKLRSF 515
           MK NV+ P TGCQK  E+ D+ KLR+F
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAF 27


>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 509

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 235 KIIRLSTLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFSIIDVR 366
           K ++L  + +G HY + H M L++S +       I  FS+ D+R
Sbjct: 22  KSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLR 65


>At5g60310.1 68418.m07559 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 616

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 596 GNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERNVNQFV 727
           G  K GF  K G     R +LL+S+  +  R   DG++ + QFV
Sbjct: 342 GFHKDGFLGKGGFGEVYRGKLLLSREKAVKRMSHDGDQGLKQFV 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,351
Number of Sequences: 28952
Number of extensions: 306909
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)