Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31052
(682 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 162 6e-39
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 156 4e-37
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 155 1e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 144 2e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 134 1e-30
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 122 8e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 121 1e-26
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 119 6e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 117 2e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 115 1e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 112 9e-24
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 87 3e-16
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 85 1e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 79 1e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 76 9e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 73 6e-12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 70 5e-11
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 70 5e-11
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 65 2e-09
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 63 7e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 58 3e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 57 3e-07
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 55 2e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 2e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 4e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 54 4e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 52 1e-05
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 50 5e-05
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 49 1e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 46 0.001
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 45 0.001
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 43 0.008
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 41 0.024
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 40 0.056
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;... 33 8.5
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 8.5
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 162 bits (394), Expect = 6e-39
Identities = 75/91 (82%), Positives = 81/91 (89%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV K
Sbjct: 4 GPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTK 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFMMLSQLRR 275
IV QRL+KVDGKVRTDPTYPAG+M + L +
Sbjct: 64 IVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 140 bits (340), Expect = 2e-32
Identities = 62/91 (68%), Positives = 73/91 (80%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTI
Sbjct: 88 DVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
RYPDPLI NDS+Q+DIA+ KI D+ G
Sbjct: 148 RYPDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 116 bits (278), Expect = 7e-25
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGK
Sbjct: 173 IKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGK 230
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 156 bits (379), Expect = 4e-37
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV K
Sbjct: 4 GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKK 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I QR IK+DGKVRTD TYPAGFM
Sbjct: 64 ICMQRFIKIDGKVRTDITYPAGFM 87
Score = 144 bits (348), Expect = 2e-33
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTI
Sbjct: 88 DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
RYPDPLIKVND+IQ+D+ T KI DF G
Sbjct: 148 RYPDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 103 bits (248), Expect = 3e-21
Identities = 40/58 (68%), Positives = 54/58 (93%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGK
Sbjct: 173 IKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGK 230
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 155 bits (375), Expect = 1e-36
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV K
Sbjct: 4 GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKK 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I QR IK+DGKVRTD TYP GFM
Sbjct: 64 ICMQRFIKIDGKVRTDITYPTGFM 87
Score = 103 bits (248), Expect = 3e-21
Identities = 40/58 (68%), Positives = 54/58 (93%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGK
Sbjct: 205 IKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGK 262
Score = 85.8 bits (203), Expect(2) = 9e-28
Identities = 35/53 (66%), Positives = 45/53 (84%)
Frame = +2
Query: 350 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDF 508
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DF
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDF 204
Score = 60.9 bits (141), Expect(2) = 9e-28
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 352
DV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 88 DVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 144 bits (349), Expect = 2e-33
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I+ QR I+VDGKVRTD TYPAGFM
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFM 87
Score = 127 bits (306), Expect = 3e-28
Identities = 58/94 (61%), Positives = 70/94 (74%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTI
Sbjct: 88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPGTCV 535
RYPDPLIK ND+I+LD+ KI++F G V
Sbjct: 148 RYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 90.2 bits (214), Expect = 4e-17
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK
Sbjct: 173 IKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGK 230
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 134 bits (325), Expect = 1e-30
Identities = 59/96 (61%), Positives = 70/96 (72%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 4 GPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTM 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFMMLSQLRRLMNCF 290
IVK R IK+DGK+RTD YP GFM + + R F
Sbjct: 64 IVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 104 bits (249), Expect = 2e-21
Identities = 46/91 (50%), Positives = 66/91 (72%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTI
Sbjct: 88 DVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
RYP P ++ ND+I+L++ T KI+DF G
Sbjct: 148 RYPHPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 90.2 bits (214), Expect = 4e-17
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF+ GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGK
Sbjct: 173 VKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGK 230
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 122 bits (294), Expect = 8e-27
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +3
Query: 6 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 185
P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 186 VKQRLIKVDGK 218
Q IK+DGK
Sbjct: 65 RMQHFIKMDGK 75
Score = 113 bits (272), Expect = 4e-24
Identities = 49/75 (65%), Positives = 59/75 (78%)
Frame = +2
Query: 302 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 481
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 482 IATTKIMDFSSLSPG 526
+ T KI DF G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 101 bits (241), Expect = 2e-20
Identities = 39/57 (68%), Positives = 52/57 (91%)
Frame = +1
Query: 511 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGK
Sbjct: 146 KFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGK 202
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 121 bits (292), Expect = 1e-26
Identities = 60/84 (71%), Positives = 66/84 (78%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV K
Sbjct: 15 GPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKK 73
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I Q IKVDGK+RTD P M
Sbjct: 74 ICMQWFIKVDGKIRTDNNLPYWIM 97
Score = 113 bits (272), Expect = 4e-24
Identities = 50/88 (56%), Positives = 65/88 (73%)
Frame = +2
Query: 236 LSCWIYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 415
L WI DV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 416 HDGRTIRYPDPLIKVNDSIQLDIATTKI 499
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
Score = 71.3 bits (167), Expect = 2e-11
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
LKF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I K
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDK 235
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 119 bits (287), Expect = 6e-26
Identities = 56/92 (60%), Positives = 67/92 (72%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 195 RLIKVDGKVRTDPTYPAGFMMLSQLRRLMNCF 290
RL+KVDGKVRT+ YP G M + +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 98.7 bits (235), Expect = 1e-19
Identities = 40/84 (47%), Positives = 62/84 (73%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGR
Sbjct: 100 LMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGR 159
Query: 428 TIRYPDPLIKVNDSIQLDIATTKI 499
TI Y DP ++V+D+++ +I T ++
Sbjct: 160 TISYVDPSVRVHDALKFNIKTGEV 183
Score = 74.9 bits (176), Expect = 2e-12
Identities = 32/59 (54%), Positives = 46/59 (77%)
Frame = +1
Query: 505 LLKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
++KF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 186 VIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGE 244
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 117 bits (282), Expect = 2e-25
Identities = 54/82 (65%), Positives = 61/82 (74%)
Frame = +3
Query: 9 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 188
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 189 KQRLIKVDGKVRTDPTYPAGFM 254
+Q L+ VD R D YPAGFM
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFM 84
Score = 85.0 bits (201), Expect = 2e-15
Identities = 42/94 (44%), Positives = 54/94 (57%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG I
Sbjct: 85 DVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRI 144
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPGTCV 535
RYPDP + D+I ++ K +D G V
Sbjct: 145 RYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 72.9 bits (171), Expect = 6e-12
Identities = 31/59 (52%), Positives = 42/59 (71%)
Frame = +1
Query: 505 LLKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
L+K G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 169 LIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 115 bits (276), Expect = 1e-24
Identities = 53/97 (54%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 428 TIRYPDPLIKVNDSIQLDIATTKIMDFSSLSPGT-CV 535
TIR+P+ LIK NDSI LD+ K++DF S G+ CV
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 111 bits (268), Expect = 1e-23
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L
Sbjct: 4 GIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLN 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I+K+ I VDGKVR D +PAG M
Sbjct: 64 ILKKNEIYVDGKVRADKNFPAGVM 87
Score = 57.2 bits (132), Expect = 3e-07
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGK
Sbjct: 173 IKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGK 230
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 112 bits (269), Expect = 9e-24
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 428 TIRYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
TIR+P+P IK+ D+++ D+ KI +F+ L G
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 83.4 bits (197), Expect = 5e-15
Identities = 54/127 (42%), Positives = 69/127 (54%), Gaps = 31/127 (24%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTG 95
GPKKHLKR+NAPK+WML+ KL +Y A RPS G
Sbjct: 85 GPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQG 144
Query: 96 PHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMMLSQL 269
PHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G M + ++
Sbjct: 145 PHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRI 204
Query: 270 RRLMNCF 290
+ F
Sbjct: 205 EKTDQSF 211
Score = 77.4 bits (182), Expect = 3e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +1
Query: 517 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+
Sbjct: 288 ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQ 342
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAG 248
I+ ++ IKV+G+VRT+ +P G
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVG 85
Score = 78.2 bits (184), Expect = 2e-13
Identities = 36/87 (41%), Positives = 61/87 (70%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
++DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 428 TIRYPDPLIKVNDSIQLDIATTKIMDF 508
+IR+ DP I + +I++ T+K++++
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIEY 171
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 85.4 bits (202), Expect = 1e-15
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 179
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 180 KIVKQRLIKVDGKVRTDPTYPAGFMMLSQLRR 275
KI+ + I VDG VR +P +P G M + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 39.5 bits (88), Expect = 0.074
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = +2
Query: 230 PYLSCWIYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 409
P I DVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 410 VTHDGRT--IRYPDP------LIKVNDSIQLDI 484
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 78.6 bits (185), Expect = 1e-13
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E K
Sbjct: 5 GPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKK 64
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I++ I +DG R + +PAG M
Sbjct: 65 IIQTGKILIDGLKRKEYKHPAGLM 88
Score = 40.7 bits (91), Expect = 0.032
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 502 GLLKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
G + F G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 178 GHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 75.8 bits (178), Expect = 9e-13
Identities = 38/81 (46%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 15 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 191
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 192 QRLIKVDGKVRTDPTYPAGFM 254
+ +KVDG VR D +P G M
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLM 83
Score = 35.5 bits (78), Expect = 1.2
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DV+ I T E++R++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 82 LMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
Query: 428 ---TIRYPDPLIKVNDSIQLDIATTKI 499
T IK DS+ D+ I
Sbjct: 142 NLITTLEAGKQIKTFDSVLYDLRNKAI 168
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 72.9 bits (171), Expect = 6e-12
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 195 RLIKVDGKVRTDPTYPAGFMMLSQL 269
+KVDGKVR D YP G M + +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 36.3 bits (80), Expect = 0.69
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DV+ + NE +R+I D RI EA K+C+++ L HDGR
Sbjct: 81 LMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
Query: 428 TI---RYPDPLIKVNDSIQLDIATTKIMDFSSLSPGTCV*SREAVTWG 562
I + + S+ +++ K+MD+ + P V + V G
Sbjct: 141 NIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVG 188
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 70.1 bits (164), Expect = 5e-11
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +
Sbjct: 7 GSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARR 66
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I+ R+I+VDG+V TD +P G M
Sbjct: 67 ILASRVIEVDGRVVTDYKFPVGLM 90
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 428 TI 433
+
Sbjct: 149 NV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
++ + +VDG VR D +P GFM
Sbjct: 65 LISEGHFRVDGVVRKDYKFPVGFM 88
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 502 GLLKFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 678
G +KF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
Score = 37.5 bits (83), Expect = 0.30
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 254 DVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 430
DV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 89 DVIEVVDTGEKFRMLPYPVKF-FKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRN 147
Query: 431 I--RYPDPLIKVND 466
I R DP V D
Sbjct: 148 ILVRVKDPRNPVED 161
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/89 (33%), Positives = 46/89 (51%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFMMLSQL 269
I+ + VDG+V D +P GFM + ++
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
D++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 89 DIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNV 146
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPGTCV 535
+ V D I L + +I + L G CV
Sbjct: 147 IIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 62.9 bits (146), Expect = 7e-09
Identities = 30/78 (38%), Positives = 44/78 (56%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 195 RLIKVDGKVRTDPTYPAG 248
+ VDGKVR D Y G
Sbjct: 65 GKVLVDGKVRKDYRYTVG 82
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/80 (38%), Positives = 41/80 (51%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 195 RLIKVDGKVRTDPTYPAGFM 254
+ VDGKVR D YP G M
Sbjct: 63 GKVLVDGKVRRDYKYPVGLM 82
Score = 33.1 bits (72), Expect = 6.4
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DVV I + R+I D T I+ E+AKYK ++ T V L DGR
Sbjct: 81 LMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
Query: 428 TI 433
I
Sbjct: 141 NI 142
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 57.2 bits (132), Expect = 3e-07
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 195 RLIKVDGKVRTDPTYPAGFM 254
R + VDG++ TD G M
Sbjct: 65 RQVLVDGRIETDLGRGVGLM 84
Score = 37.1 bits (82), Expect = 0.40
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ DV+++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 428 TIRYPD-PLIKVNDSIQLDIATTKIMDFSSLSPG 526
I D L D++ + + + S G
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 195 RLIKVDGKVRTDPTYPAGFM 254
+ VDG R D +P G M
Sbjct: 64 GNVLVDGVARKDLRFPVGLM 83
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.4 bits (125), Expect = 2e-06
Identities = 30/87 (34%), Positives = 42/87 (48%)
Frame = +2
Query: 266 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 445
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 446 PLIKVNDSIQLDIATTKIMDFSSLSPG 526
KV D + + KI + + PG
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 41.5 bits (93), Expect = 0.018
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 21 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 200
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 201 IKVDGKVRTDPTYPAGFM 254
+KVDGK + + GFM
Sbjct: 66 VKVDGKTVREKKFAVGFM 83
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 4e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +3
Query: 21 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 200
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 201 IKVDGKVRTD 230
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
Score = 34.3 bits (75), Expect = 2.8
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 385
++D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 80 VFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 53.6 bits (123), Expect = 4e-06
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 195 RLIKVDGKVRTDPTYPAG 248
+ VDG R D +P G
Sbjct: 63 GKVLVDGISRKDLRFPVG 80
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
++DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 81 LFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGT 139
Query: 428 TI 433
I
Sbjct: 140 NI 141
Score = 35.5 bits (78), Expect = 1.2
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
LKFE GNL M+ GG++ G G I+ RE + V I T F T + V +IG+
Sbjct: 166 LKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +3
Query: 9 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 185
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 186 VKQRLIKVDGKVRTDPTYPAG 248
+ + VDG+ D +P G
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVG 86
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDG 424
++DV++I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +T DG
Sbjct: 87 LFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DG 145
Query: 425 RTIRYPDPLIKVNDSIQLDIATTKIMD 505
RT D K + + +I KI +
Sbjct: 146 RTF-LGDNSYKTHYGVVYEIPNFKIRE 171
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 50.0 bits (114), Expect = 5e-05
Identities = 23/91 (25%), Positives = 47/91 (51%)
Frame = +3
Query: 21 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 200
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 201 IKVDGKVRTDPTYPAGFMMLSQLRRLMNCFV 293
+KVDG++ D +P GFM + + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 39.1 bits (87), Expect = 0.098
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRT 430
DV+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+T
Sbjct: 85 DVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKT 143
Query: 431 IRYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
I I +D + + I +I + ++ G
Sbjct: 144 IVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +3
Query: 12 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 191
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 192 QRLIKVDGKVRTDPTYPAGFMMLSQLRRL 278
QR + V+G+ D G + + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
++D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 428 TIRYPDPLIKVNDSIQLDIAT 490
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
Score = 39.1 bits (87), Expect = 0.098
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 514 FESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGK 681
+ GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G+
Sbjct: 174 YAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGR 231
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +3
Query: 15 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 194
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 195 RLIKVDGKVRTDPTYPAG 248
+ ++GK +D P G
Sbjct: 63 DNVLINGKAISDEERPVG 80
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +2
Query: 248 IYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 427
+ D +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 86 LMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
Query: 428 TIRYPDPLIKVNDSIQLDIATTKIM 502
++ IKV DS+ + +I+
Sbjct: 146 ELKINYAKIKVEDSLLIKTINDEIV 170
Score = 41.9 bits (94), Expect = 0.014
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +1
Query: 475 VRHCNYEDYGLLKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATR 654
++ N E LKFE G+LC+IT G++LG + I + ++H++ G +
Sbjct: 162 IKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKK 221
Query: 655 LNNVFIIGK 681
+++ +IG+
Sbjct: 222 CSDLLVIGE 230
Score = 40.3 bits (90), Expect = 0.042
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
G KKH KR+++ K G++ + S+GPH + + L+ ++ A E K
Sbjct: 4 GIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQK 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
+VK + V+GK +P M
Sbjct: 64 VVKTGFLYVNGKKCLSHKFPISLM 87
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +3
Query: 21 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 200
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 201 IKVDGKVRTDPTYPAGFM 254
+ VDGKV + GFM
Sbjct: 66 VMVDGKVVKERRRGIGFM 83
Score = 35.9 bits (79), Expect = 0.91
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 505 LLKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKDSTGHTFATRLNNVFIIG 678
+LKF GN ITGG ++G + TI S E + ++VH+ + F+T + VF++G
Sbjct: 166 VLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 41.1 bits (92), Expect = 0.024
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = +3
Query: 12 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 191
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 192 QRLIKVDGKVRTDPTYPAGFMMLSQL 269
++VDG RT + G M + +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 39.9 bits (89), Expect = 0.056
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = -2
Query: 675 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLEK 505
D EHV + R + ++ GVL VHN EG + LA D V + DH Q ++L++
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDR 109
Score = 35.9 bits (79), Expect = 0.91
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = -1
Query: 472 DGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 293
+G+ D + + +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 292 TKQFISLLN*DNI 254
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = -2
Query: 681 LADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLEK 505
LA+ EH+ Q + + G+L+V ++G + L D ++T V ++ H +P +K ++
Sbjct: 117 LANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFDE 175
>UniRef50_Q9P557 Cluster: Related to merozoite surface antigen 2;
n=1; Neurospora crassa|Rep: Related to merozoite surface
antigen 2 - Neurospora crassa
Length = 388
Score = 32.7 bits (71), Expect = 8.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 509 SSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSP 649
+S + T VT G+ P A P+P+T T+ P DTP P
Sbjct: 277 TSAAAATAAAPTNEVTDGLRKPDASAEQQPSPTTATTTTPPTDTPKP 323
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 8.5
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 48 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 209
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 771,418,113
Number of Sequences: 1657284
Number of extensions: 17034132
Number of successful extensions: 53845
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 50846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53789
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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