Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31052
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.76 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   1.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   1.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   1.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   1.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   1.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   1.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPA-PSTLCTSR 625
            S+    T   S    + G+ +P   +   P  P+T  TS+
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQ 164


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 132 KSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 37
           K PG S     GD + + V  H     T++ W
Sbjct: 104 KMPGPSVEVCLGDEVIIDVVNHLSSDSTTIHW 135


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 22/115 (19%), Positives = 41/115 (35%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 22/115 (19%), Positives = 41/115 (35%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 22/115 (19%), Positives = 41/115 (35%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 22/115 (19%), Positives = 41/115 (35%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 22/115 (19%), Positives = 41/115 (35%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 20  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 79

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 80  RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 134


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 22/115 (19%), Positives = 41/115 (35%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 22/115 (19%), Positives = 40/115 (34%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 505
           H + P    Y   + +R+A      P   TH   + +Y D       +   D++T     
Sbjct: 64  HGLQPTMGDYTQLQPQRLAPTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP 123

Query: 506 FSSLSPGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTCS 670
            S+    T   S    + G+ +P   +   P      T+     +P+    +T S
Sbjct: 124 RSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/55 (21%), Positives = 22/55 (40%)
 Frame = +2

Query: 326 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 490
           H + P    Y   + +R+A+     P   TH   + +Y D       +   D++T
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLST 118


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 126 PGASTRATCGDRLTVSVHTHRQVCPTSMLW 37
           PG S +   GD++ + V  H +    ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 126 PGASTRATCGDRLTVSVHTHRQVCPTSMLW 37
           PG S +   GD++ + V  H +    ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 638 CPVESLMCTMSKEPGCLSRDTMVPTRPKLR 549
           C V+S     +K  GC S ++ V T   LR
Sbjct: 95  CSVKSESSQAAKYGGCFSGESTVLTSTGLR 124


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 342 RRLSTSCVKSSVWRPDLRMFR 404
           R+++  C+KS  WR  L + +
Sbjct: 525 RKVTFQCLKSIAWRAFLAVLK 545


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,623
Number of Sequences: 336
Number of extensions: 4127
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)