Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31052
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 1e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 144 1e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 2e-35
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 31 0.15
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.82
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 28 1.1
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 28 1.4
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 27 1.9
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.9
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 2.5
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (349), Expect = 1e-35
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTI
Sbjct: 88 DVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDF 508
RYPDPLIKVND+I+L++ T KI F
Sbjct: 148 RYPDPLIKVNDTIKLNLETNKIESF 172
Score = 143 bits (346), Expect = 2e-35
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I+ QRLIKVDGKVRTD T+P GFM
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFM 87
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/58 (60%), Positives = 47/58 (81%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (349), Expect = 1e-35
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTI
Sbjct: 88 DVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDF 508
RYPDPLIKVND+I+L++ T KI F
Sbjct: 148 RYPDPLIKVNDTIKLNLETNKIESF 172
Score = 141 bits (342), Expect = 7e-35
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I+ QRLI+VDGKVRTD T+P GFM
Sbjct: 64 ILMQRLIQVDGKVRTDSTFPTGFM 87
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/58 (60%), Positives = 47/58 (81%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (346), Expect = 2e-35
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = +3
Query: 3 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
I+ QRLIKVDGKVRTD T+P GFM
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFM 87
Score = 143 bits (346), Expect = 2e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
DV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTI
Sbjct: 88 DVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTI 147
Query: 434 RYPDPLIKVNDSIQLDIATTKIMDF 508
RYPDPLIKVND+I+L++ T KI F
Sbjct: 148 RYPDPLIKVNDTIKLNLETNKIESF 172
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/58 (60%), Positives = 47/58 (81%)
Frame = +1
Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
+KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 173 IKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 454 QSQRFHPVRHCNYEDYGLLKFES 522
++++ HPVRH YED L FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 672 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 574
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 666 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLEKSIIF 493
H P GEG R V N + + +H+P+ S+ +T PGLK E + F
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSF 341
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 624 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLEKSI 499
LD+H V S+ D A T + AS DH VPG K E ++
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFETNL 211
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 579 HDGAHTPQVTASRDHTQVPGLKLEKSIIFVVAMSNWME 466
+D + P V H PG+ +K I A SNW +
Sbjct: 80 NDASFEPTVPIYESHVSAPGISKKKKNIKDTAGSNWFD 117
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 248 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 93
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 117 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMM--LSQLRRLMNCF 290
LPLV ++ + + N L IV Q L+ V Y + LS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 291 V*SMMLRADSQSTVSPLRRLSTSCVK 368
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 511 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 615
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 430
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 431 IR 436
++
Sbjct: 1778 LK 1779
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 349 SLLRGDTVDCESALNIID*TKQ 284
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,594
Number of Sequences: 5004
Number of extensions: 67197
Number of successful extensions: 205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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