Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31052
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   3e-41
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)                   30   2.0  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.6  
SB_5269| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   8.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  165 bits (401), Expect = 3e-41
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
           GPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV K
Sbjct: 428 GPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKK 487

Query: 183 IVKQRLIKVDGKVRTDPTYPAGFM 254
           IVKQRLIK+DGKVRTD TYPAGFM
Sbjct: 488 IVKQRLIKIDGKVRTDTTYPAGFM 511



 Score =  132 bits (318), Expect = 3e-31
 Identities = 59/91 (64%), Positives = 72/91 (79%)
 Frame = +2

Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
           DVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTI
Sbjct: 512 DVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTI 571

Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
           RYPDP IKVND++ +DI T K++D+     G
Sbjct: 572 RYPDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 38/58 (65%), Positives = 50/58 (86%)
 Frame = +1

Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
           +KF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGK
Sbjct: 597 IKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGK 654


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = -2

Query: 543 RDHTQVPGLKLEKSIIFVVAMSNWMESLTLISG 445
           RD+ ++ G +L+K IIF++ + +++ S  LISG
Sbjct: 180 RDYLRIKGRRLQKGIIFILILKDYL-SYHLISG 211


>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
          Length = 460

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/96 (22%), Positives = 43/96 (44%)
 Frame = +2

Query: 236 LSCWIYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 415
           L C  Y+V   E  NE+  L++++  R T +R      K    K K+ +   K   + + 
Sbjct: 190 LDCTFYEVSISEGYNEVQELLHELLKRITRNRGEKGTEKKDSFKEKKDSFKEKKDSFKII 249

Query: 416 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFSSLSP 523
               ++R P   +K + S++    T+ +  +S  +P
Sbjct: 250 DKKDSLRVPVLNLKRSPSLERKKRTSSLDKYSDKTP 285


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 137 EES--SEVCFDRKRSPENCE 190
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_5269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 424 PHHPLSRPTYQSQRFHPVRHCNYEDYGLLKFESGNLCMITGGRNLGRVGTIVSRERHPGS 603
           PH  +SR +    RFH     N   + LL   SG     TG  + G + +    +RHP S
Sbjct: 305 PHDIVSRGSTLLLRFHSDFSVNERGFRLLFTRSGCSHSFTG--SSGVIASPNHPDRHPIS 362

Query: 604 FDIVH-IKDSTGHTFA 648
            D  + I+ ++GH  A
Sbjct: 363 VDCSYKIEVASGHIVA 378


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 214 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 98
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 236 LSCWIYDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 415
           L  W+    S  K N ++  I D+  R  I  +TP+    K C+V R++TGP    +++ 
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317

Query: 416 HDG 424
            +G
Sbjct: 318 SEG 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,564,956
Number of Sequences: 59808
Number of extensions: 560623
Number of successful extensions: 1670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)